Man pages for KechrisLab/HeritSeq
Heritability of Gene Expression for Next-Generation Sequencing
| computeVPC.CP | Calculate the compound Poisson (CP) variance partition... |
| computeVPC.NB | Calculate the negative binomial (NB) variance partition... |
| fitComputeVPC.lmer | Fit linear mixed models (LMM) and compute the VPC values for... |
| fit.CP | Fit compound Poisson mixed effect models (CPMM) for one or... |
| fit.NB | Fit negative binomial mixed models (NBMM) for one or more... |
| getBootCI | Compute variance partition coefficition (VPC) confidence... |
| getReadMatrix.CP | Simulate a read matrix from compound Poisson mixed effect... |
| getReadMatrix.NB | Simulate a count matrix from negative binomial mixed effect... |
| para_cp | Parameter matrix obtained from simData by fitting CPMM. |
| para_nb | Parameter matrix obtained from simData by fitting NBMM. |
| simData | A simulated sequencing dataset. |
| simData_voom | Voom transformed version of simData. |
| simData_vst | Variance stabilize transformed version of simData. |
| strains | List of strain names for the samples. |
| weights_voom | Weights used in the voom transformation. |
