Man pages for KelseyChetnik/MetaClean
Detection of Low-Quality Peaks in Untargeted Metabolomics Data
| calculateApexMaxBoundaryRatio | Calculate Apex-Max Boundary Ratio (of a Chromatographic Peak) |
| calculateElutionShift | Calculate Elution Shift (of a Peak Group) |
| calculateEvaluationMeasures | Calculate Evaluation Measures |
| calculateFWHM | Calculate FWHM2Base (of a Chromatographic Peak) |
| calculateGaussianSimilarity | Calculate Gaussian Similarity (of a Chromatographic Peak) |
| calculateJaggedness | Calculate Jaggedness (of a Chromatographic Peak) |
| calculateModality | Calculate Modality (of a Chromatographic Peak) |
| calculateRetentionTimeConsistency | Calculate Retention Time Consistency (of a Peak Group) |
| calculateSharpness | Calculate Sharpness (of a Chromatographic Peak) |
| calculateSymmetry | Calculate Symmetry (of a Chromatographic Peak) |
| calculateTPASR | Calcualte Triangle Peak Area Similarity Ratio (TPASR) (of a... |
| calculateZigZagIndex | Calculate the Zig-Zag Index (of a Chromatographic Peak) |
| evalObj-class | A custom class for storing the chromatographic peak data... |
| ex_peakData | Example peakData - value input to calculate... functions... |
| ex_peakDataList | Example peakDataList - value input to calculteElutionShift... |
| ex_pts | Example pts - value input to caculate... functions (except... |
| ex_ptsList | Example ptsList - value input to calculteElutionShift and... |
| getBarPlots | Generate Bar Plots for the Seven Evaluation Measures |
| getCDPlots | Generate Bar Plots for the Seven Evaluation Measures |
| getEvalObj | Extract peak data object |
| getEvaluationMeasures | Calculate Evaluation Measures |
| getPeakQualityMetrics | Calculate the 12 Peak Quality Metrics |
| getPredicitons | Get MetaClean Predictions |
| pqm_development | Example Peak Quality Metrics Data Frame for Development... |
| pqm_test | Example Peak Quality Metrics Data Frame for Test Dataset. |
| rsdFilter | RSD Filteirng |
| runCrossValidation | Run Cross-Validation for A List of Algoirthms with Peak... |
| summaryStats | Calculate summary statistics for evaluation measures |
| trainClassifier | Train MetaClean Classifier |
