runTraitBasedModel: Run the community spectrum simulator manually

In Kenhasteandersen/Community-spectrum: Community size spectrum simulator

Run the community spectrum simulator manually

Description

Run the community spectrum simulator manually

Usage

runTraitBasedModel(
  nSpecies = 18,
  F0 = 0.3 + 0 * (1:nSpecies),
  S = NA,
  param = baseparameters(10^seq(log10(4), log10(30000), length.out = nSpecies), kappa =
    1.3, h = 20)
)

Arguments

nSpecies	Number of asymptotic size groups ("species"). Only relevant for trait-based model.
F0	Array with fishing mortality on each species
S	Output from a previous simulation to use as initial conditions
param	Set of parameters to use

Value

A structure with the output of the simulation with the main fields being:

- t: The time steps where the solution is saved

- nSpecies: no. of asymptotic size groups

- w: the weight classes

- g: growth rate as a function of: time, species, weight

- f: feeding level (consumption divided by max consumption) as a function of: time, species, weight

- M2R: predation mortality on resource

- M2, Ms, Fin: mortality from predation, starvation and fishing

- Ntot: community spectrum as a function of time and weight

- N: species spectra as a function of time, species and weight

- SSB: spawning stock biomass as a function of time and species

- Yield: fisheries yield as a function of time and species

Examples

runTraitBasedModel()

Kenhasteandersen/Community-spectrum documentation built on May 2, 2022, 9:44 a.m.