bidirectional_motifs3: Table of motifs

In KevCaz/motifcensus: Count 3-nodes motifs for unipartite networks

Table of motifs

Description

Display all the 64 bidirectional 3-species motifs, for every motif, details interactions and name notable motifs.

Usage

bidirectional_motifs3

Format

a matrix of 64 rows (1 row per motif) and 13 columns:

• mid: motif identifier

• i_to_j: a logical, is there an interaction from i to j;

• j_to_i: a logical, is there an interaction from j to i;

• i_to_k: a logical, is there an interaction from i to k;

• k_to_i: a logical, is there an interaction from k to i;

• j_to_k: a logical, is there an interaction from j to k;

• k_to_j: a logical, is there an interaction from k to j;

• pid_i: position identifier of i;

• pid_j: position identifier of j;

• pid_k: position identifier of k;

• psum: sum of positions (could be used to identify motifs);

• motif: motifs description using ascii characters;

• name_uni: motif name (in unidirectionnal networks).

References

• Milo, R. (2002). Network Motifs: Simple Building Blocks of Complex Networks. Science, 298(5594), 824–827. https://doi.org/10.1126/science.298.5594.824

KevCaz/motifcensus documentation built on May 13, 2023, 11:46 a.m.