plotGX: Plot Curve against Time

Description Usage Arguments Value Author(s) Examples

Description

plotGX finds the input id(s) and genotype name(s) in the dataset and plot the selected trait against measurement time. Replicates are categoried by genotypes. Input data can be 3 types: 1. table. Every measurement in this table will be ploted. 2.genotype + dataset. genotype must be in the dataset provided. 3. id + dataset. id must be in the dataset provided. PGN format Plots are saved into the working directory with a naming convention of "trait + genotype name.pgn". Plots are used for identifying outliers.

Usage

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plotGX(trait, table = NULL, genotype = NULL, id = NULL, dataset = NULL)

Arguments

trait

character of the trait you want to view. ( "Photo" / "Cond" / "Ci/Ca" )

table

Plot out all the individual entries in this table. pass in GXcurve class object.

genotype

plot out the selected genotypes in corresponding dataset. dataset must be provided. pass in character of genotype.

id

plot out the selected plot names in corresponding dataset. dataset must be provided. pass in character of leaf name.

dataset

different from table, this function doesn't plot out all the individuals in dataset, but only the chosen genotype or id included in it. argument dataset has to pair with genotype or id. pass in GXcurve class object.

Value

Saves plots of selected physiological trait of selected entries over time into the working directory.

Author(s)

Jiayang Xie <kevinxie@illinois.edu>

Examples

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data(AllCurve)
plotGX(trait = "Photo", table = AllCurve )
plotGX(trait = "Cond", genotype = "Z019E0032", dataset = AllCurve )
plotGX(trait = "Ci.Ca", id = "120_1" , dataset = AllCurve )

KevinCrab/Instant-Gas-Exchange-Measurements documentation built on May 13, 2019, 5:32 p.m.