KevinStevenson89/R_Final_Project_RNASeqPrep: Determines minimum gene expression parameters and estimates costs for RNA-Seq analysis

This package contains functions for RNA-Seq gene expression analysis. Includes functions to calculate if gene of interest meets the minimum 50 RPKM threshold value for it to be considered expressed. Also contains a function for accurate single-cell RNA-Seq gene expression analysis and cell type identification criteria. A RNA-Seq run cost estimation function based on number of lanes, conditions, and replicates is included in addition to datasets to use to tests the functions.

Getting started

Package details

AuthorKevin Stevenson
MaintainerKevin Stevenson <[email protected]>
LicenseGNU
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("KevinStevenson89/R_Final_Project_RNASeqPrep")
KevinStevenson89/R_Final_Project_RNASeqPrep documentation built on May 10, 2019, 2:41 p.m.