PurgeXenoGenes: PurgeXenoGenes

In KevinTThomas/sle_activity_scrnaseq: sle_activity_scrnaseq

PurgeXenoGenes

Description

Removes counts and gene loadings for a secondary species and strips the primary species prefix from the remaining genes. Useful when cleaning an object that had controls cells added for multi-modal assays such as CITE-seq or REAP-seq.

Usage

PurgeXenoGenes(object, primary_species_prefix, secondary_species_prefix)

Arguments

object	Formerly mixed species Seurat object
primary_species_prefix	Literal string or regex prefix denoting genes from the species of interest
secondary_species_prefix	Literal string or regex prefix denoting genes from the species used as control

Value

Seurat object

Examples

pbmc <- PurgeXenoGenes(object = pbmc, primary_species_prefix = "hg38-", secondary_species_prefix = "mm10-")

KevinTThomas/sle_activity_scrnaseq documentation built on Aug. 8, 2022, 12:25 p.m.