data.cecal: Real data

In KiRinHong/miMediation: Mediation Test for Microbime Data

Real data

Description

This data is derived from a real microbiome dataset (Cho et al., 2012), which includes 48 samples (38 in antibiotics vs. 10 in controls).

Usage

data(data.cecal)

Format

data.cecal contains the following components:

treatment

treatment indicator: Antibiotics group and control group are coded as 1 and 0, respectively.

mediators

an abundance matrix with the top 100 most abundant taxa that have at least 20% non-zero observations.

outcome

body fat percentage.

tree

a phylogenetic tree.

Source

https://doi.org/10.1038/nature11400

References

Cho, I. et al. (2012). Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature 488:621-626.

Examples

data(data.cecal)

KiRinHong/miMediation documentation built on March 31, 2024, 4:31 a.m.