allTrees: Compute all trees topologies.

In KlausVigo/phangorn: Phylogenetic Reconstruction and Analysis

Compute all trees topologies.

Description

allTrees computes all bifurcating tree topologies for rooted or unrooted trees with up to 10 tips. The number of trees grows fast.

Usage

allTrees(n, rooted = FALSE, tip.label = NULL)

Arguments

n	Number of tips (<=10).
rooted	Rooted or unrooted trees (default: rooted).
tip.label	Tip labels.

Value

an object of class multiPhylo.

Author(s)

Klaus Schliep [e-mail]

See Also

rtree, nni, howmanytrees, dfactorial

Examples

trees <- allTrees(5)

old.par <- par(no.readonly = TRUE)
par(mfrow = c(3,5))
for(i in 1:15)plot(trees[[i]])
par(old.par)

KlausVigo/phangorn documentation built on Nov. 20, 2024, 12:47 p.m.