allTrees: Compute all trees topologies.

View source: R/treeManipulation.R

allTreesR Documentation

Compute all trees topologies.

Description

allTrees computes all bifurcating tree topologies for rooted or unrooted trees with up to 10 tips. The number of trees grows fast.

Usage

allTrees(n, rooted = FALSE, tip.label = NULL)

Arguments

n

Number of tips (<=10).

rooted

Rooted or unrooted trees (default: rooted).

tip.label

Tip labels.

Value

an object of class multiPhylo.

Author(s)

Klaus Schliep klaus.schliep@gmail.com

See Also

rtree, nni, howmanytrees, dfactorial

Examples


trees <- allTrees(5)

old.par <- par(no.readonly = TRUE)
par(mfrow = c(3,5))
for(i in 1:15)plot(trees[[i]])
par(old.par)


KlausVigo/phangorn documentation built on Nov. 5, 2024, 11 a.m.