readFCSFiles: Reads .fcs files

In KoenAStam/massive: What the Package Does (One Line, Title Case)

Description

A wrapper function around read.FCS to read .fcs files. It will only keep relevant channels and renames them according to the 'FCSMeta' parameter.

Usage

readFCSFiles(path = ".", FCSMeta, asinh5 = TRUE, downsampling)

Arguments

path	A character string indicating the location of the .fcs files. The default corresponds to the working directory
FCSMeta	A list holding meta information on the .fcs files. The default is set to readFCSMeta
asinh5	Logical, should the data be transformed with the arc-sinh cofactor 5
downsampling	An integer that indicates the size to downsample to. If not supplied, no downsampling will be performed.

Examples

FCSDir <- system.file("extdata", package="massive")
FCSData <- readFCSFiles(path=FCSDir)

KoenAStam/massive documentation built on April 4, 2020, 2:56 a.m.