iso_remove_problematic_peak_mappings: Remove problematic peak mappings

In KopfLab/isoprocessorCUB: IRMS data processor

Description

Remove peak mappings that were problematic (unidentified, missing, or ambiguous) during peak mapping.

Usage

iso_remove_problematic_peak_mappings(...)

## S3 method for class 'iso_file_list'
iso_remove_problematic_peak_mappings(
  iso_files,
  remove_unidentified = TRUE,
  remove_missing = TRUE,
  remove_ambiguous = TRUE,
  remove_mapping_info_columns = TRUE,
  quiet = default(quiet)
)

## S3 method for class 'data.frame'
iso_remove_problematic_peak_mappings(
  peak_table,
  remove_unidentified = TRUE,
  remove_missing = TRUE,
  remove_ambiguous = TRUE,
  remove_mapping_info_columns = TRUE,
  quiet = default(quiet)
)

Arguments

...	S3 method placeholder parameters, see class specific functions for details on parameters
iso_files	collection of continuous flow iso_file objects
quiet	whether to display (quiet=FALSE) or silence (quiet = TRUE) information messages. Set parameter to overwrite global defaults for this function or set global defaults with calls to iso_turn_info_message_on and iso_turn_info_message_off
peak_table	data frame with mapped peaks. Requires the is_identified, is_missing and is_ambiguous columns to be present.
remove_mapping_info_column	whether to automatically remove mapping info columns. If true and: remove_unidentified = TRUE - is_identified column automatically removed remove_missing = TRUE - is_missing column automatically removed remove_ambiguous = TRUE - is_ambiguous, n_matches, and n_overlapping columns automatically removed

Value

the data with the problematic peak mappings remove

See Also

Other peak mapping functions: iso_get_problematic_peaks(), iso_map_peaks(), iso_summarize_peak_mappings()

KopfLab/isoprocessorCUB documentation built on Nov. 8, 2021, 9:54 a.m.