load_LANS_summary: Load LANS summary data

In KopfLab/lans2r: Work with Look at NanoSIMS Data in R

Load LANS summary data

Description

Load the ROI summary information exported from LANS analyses and attach additional information to each analysis. Uses read_roi_data to read individual files.

Usage

load_LANS_summary(
  analysis,
  ...,
  base_dir = ".",
  ion_data_only = TRUE,
  load_zstacks = TRUE,
  quiet = FALSE
)

Arguments

analysis	vector of LANS analysis folder names
...	vectors of additional information to attach to each analysis, each argument has to have the same length as the 'analysis' parameter (or length 1)
base_dir	the directory where all the analysis folders are located (defaults to current directory)
ion_data_only	whether to import only ion data (TRUE by default), rather than any derived files (e.g. ratios calculated within LANS). Recommend using calculate_ratios and calculate_abundances to process the raw ion counts in easy format and good error propagation.
load_zstacks	whether to load the planes data (ion-z.dat files need to be exported from LANS for this to be possible - they are created when the "Display depth profiles in ROI" is checked during "Display masses")
quiet	whether to report information on the loaded data or not

KopfLab/lans2r documentation built on Feb. 22, 2023, 3:25 p.m.