Files in KosukeHamazaki/RAINBOW

Genome-Wide Association Study with SNP-Set Methods

LICENSE.md R/EMM_functions_cpp.R R/RAINBOW.R R/RGWAS.epistasis.R R/RGWAS.menu.R R/RGWAS.multisnp.R R/RGWAS.normal.R R/RGWAS.twostep.R R/RGWAS.twostep.epi.R R/RcppExports.R R/Rice_Zhao_etal.R R/Rice_geno_map.R R/Rice_geno_score.R R/Rice_pheno.R R/SS_gwas.R R/examples/EM3.cpp_example.R R/examples/EM3.linker.cpp_example.R R/examples/EMM.cpp_example.R R/examples/RGWAS.epistasis_example.R R/examples/RGWAS.multisnp_example.R R/examples/RGWAS.normal_example.R R/examples/RGWAS.twostep.epi_example.R R/examples/RGWAS.twostep_example.R R/functions_for_RGWAS.R R/genetrait.R R/other_useful_functions.R RAINBOW.pdf README.md inst/doc/RAINBOW.R inst/doc/RAINBOW.Rmd man/CalcThreshold.Rd man/EM3.cpp.Rd man/EM3.linker.cpp.Rd man/EMM.cpp.Rd man/EMM1.cpp.Rd man/EMM2.cpp.Rd man/MAF.cut.Rd man/RAINBOW.Rd man/RGWAS.epistasis.Rd man/RGWAS.menu.Rd man/RGWAS.multisnp.Rd man/RGWAS.normal.Rd man/RGWAS.twostep.Rd man/RGWAS.twostep.epi.Rd man/Rice_Zhao_etal.Rd man/Rice_geno_map.Rd man/Rice_geno_score.Rd man/Rice_pheno.Rd man/SS_gwas.Rd man/See.Rd man/calcGRM.Rd man/cumsumPos.Rd man/design.Z.Rd man/estNetwork.Rd man/estPhylo.Rd man/genesetmap.Rd man/genetrait.Rd man/make.full.Rd man/manhattan.Rd man/manhattan.plus.Rd man/manhattan2.Rd man/manhattan3.Rd man/modify.data.Rd man/plotHaploNetwork.Rd man/plotPhyloTree.Rd man/qq.Rd man/score.calc.LR.MC.Rd man/score.calc.LR.Rd man/score.calc.MC.Rd man/score.calc.Rd man/score.calc.epistasis.LR.Rd man/score.calc.epistasis.score.Rd man/score.calc.score.MC.Rd man/score.calc.score.Rd man/score.cpp.Rd man/score.linker.cpp.Rd man/spectralG.cpp.Rd man/welcome_to_RGWAS.Rd vignettes/RAINBOW.Rmd