Files in KotulskaLab/AmyloGraph

AmyloGraph: a comprehensive database of amyloid-amyloid interactions

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/issue_template.md .github/SUPPORT.md LICENSE.md NEWS.md R/AGID_button.R R/app.R R/button_bar.R R/buttons.R R/data.R R/download_handler.R R/elem_app_body.R R/elem_app_main_panel.R R/elem_filter_control_panel.R R/elem_info_panel.R R/elem_select_node.R R/element-GoogleAnalytics.R R/element-filterCheckbox.R R/element-ifelsePanel.R R/markdown_texts.R R/module_about.R R/module_attribute_filter.R R/module_db_statistics.R R/module_filter_control.R R/module_group_edges.R R/module_interaction_doi.R R/module_interaction_property.R R/module_motif_filter.R R/module_protein_sequence.R R/module_single_interaction.R R/module_single_protein.R R/module_table.R R/observe_edges_change.R R/observe_filter_active.R R/observe_graph_buttons.R R/observe_interaction_selection.R R/observe_moving_selection.R R/observe_node_selection.R R/observe_row_selection.R R/observe_selecting_all.R R/observe_tab_visited.R R/reactive_allow_selection_transfer.R R/reactive_base_data.R R/reactive_graph_data.R R/reactive_node_positions.R R/reactive_previous_tab.R R/reactive_selected_node.R R/reactive_selection_config.R R/reactive_table_data.R R/render_interactions_table.R R/render_network.R R/render_network_download.R R/render_num_interactions.R R/render_protein_info.R R/server.R R/text.R R/ui.R R/util-buttons.R R/util-linkify.R R/util-motifs.R R/util-prettify_chains.R R/util-read_chains.R R/util-valid.R R/util.R R/vis.R R/zzz.R README.Rmd README.md cran-comments.md inst/AmyloGraph/app.R inst/AmyloGraph/manuals/aggregation_speed.md inst/AmyloGraph/manuals/elongates_by_attaching.md inst/AmyloGraph/manuals/heterogenous_fibers.md inst/AmyloGraph/manuals/ignore_filters.md inst/AmyloGraph/manuals/label_group.md inst/AmyloGraph/manuals/motif.md inst/AmyloGraph/manuals/select_in_table.md inst/AmyloGraph/manuals/select_node.md inst/AmyloGraph/summarize_data.R inst/AmyloGraph/transform_data.R inst/publication-functions/create-plot.R inst/publication-functions/create_supplements.R inst/publication-functions/supplements.Rmd man/AGID_button.Rd man/GoogleAnalytics.Rd man/HTML_download_handler.Rd man/XGMML_download_handler.Rd man/add_none.Rd man/add_sequence_info.Rd man/ag_colnames.Rd man/ag_data_interactions.Rd man/ag_data_nodes.Rd man/ag_data_proteins.Rd man/ag_data_references.Rd man/ag_option.Rd man/citify.Rd man/collect_tags.Rd man/color_by_attribute.Rd man/contains_motif.Rd man/correct_motif.Rd man/count-unique-interacts.Rd man/define_button.Rd man/deparse_chains.Rd man/empty_buffer.Rd man/filter_by_attribute.Rd man/filter_by_motif.Rd man/group_by_attribute.Rd man/if_null_else.Rd man/index_line.Rd man/invert_names.Rd man/is_node_selected.Rd man/label_and_order.Rd man/linkify_doi.Rd man/linkify_uniprot.Rd man/load_js_code.Rd man/markdown_ag_version.Rd man/md-section.Rd man/observe-disable-buttons.Rd man/observe_deselecting_all.Rd man/observe_edges_change.Rd man/observe_filter_active.Rd man/observe_interaction_selection.Rd man/observe_moving_selection.Rd man/observe_node_selection.Rd man/observe_select_in_table_button.Rd man/observe_selecting_all.Rd man/patternize_motif.Rd man/pluralize.Rd man/prettify_chains.Rd man/prettify_sequence_output.Rd man/reactive_allow_selection_transfer.Rd man/reactive_base_data.Rd man/reactive_graph_data.Rd man/reactive_node_positions.Rd man/reactive_selected_node_label.Rd man/reactive_selection_config.Rd man/reactive_subtable_data.Rd man/reactive_table_data.Rd man/read_chains.Rd man/render_network.Rd man/render_num_interactions_by_paper.Rd man/render_num_interactions_by_protein.Rd man/render_protein_info.Rd man/safe_seq.Rd man/select_graph_columns.Rd man/sequence_indices.Rd man/sequence_to_lines.Rd man/table_download_handler.Rd man/text_label_attribute.Rd man/text_question_attribute.Rd man/toggle_state_and_css.Rd man/visAGNetwork.Rd man/visResetEdges.Rd man/visToggleNodes.Rd tests/testthat.R tests/testthat/setup-ag_values.R tests/testthat/test-server_filter_control.R tests/testthat/test-server_interactions_table.R tests/testthat/test-server_single_protein.R tests/testthat/test-util-buttons.R tests/testthat/test-util-motifs.R tests/testthat/test-util-read_chains.R vignettes/definitions.Rmd