Files in KrasnitzLab/CNVMetrics
Copy Number Variant Metrics
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AllGenerics.R
R/CNVMetrics.R
R/CNVMetricsInternalMethods.R
R/CNVMetricsLog2ratioInternalMethods.R
R/CNVMetricsMethods.R
R/CNVMetricsOverlapInternalMethods.R
R/CNVMetricsSimulations.R
README.md
_pkgdown.yml
inst/CITATION
inst/extdata/demo01.seg
inst/extdata/demo02.seg
inst/extdata/demo03.seg
inst/extdata/mm10.blacklist.bed
inst/extdata/mousePairedOrganoids.txt
inst/extdata/mousePairedOrganoidsInfo.txt
man/CNVMetrics-package.Rd
man/calculateJaccard.Rd
man/calculateLog2ratioMetric.Rd
man/calculateOneLog2valueMetricT.Rd
man/calculateOneOverlapMetricT.Rd
man/calculateOverlapMetric.Rd
man/calculateSorensen.Rd
man/calculateSzymkiewicz.Rd
man/calculateWeightedEuclideanDistanceFor2Samples.Rd
man/createDisjoinSegmentsForTwoSamples.Rd
man/figures/CNVMetrics.png
man/figures/CNVMetrics_text.jpg
man/is.CNVMetric.Rd
man/plotMetric.Rd
man/plotOneMetric.Rd
man/print.CNVMetric.Rd
man/processChr.Rd
man/processSim.Rd
man/simChr.Rd
man/validateCalculateOverlapMetricParameters.Rd
man/validatecalculateLog2ratioMetricParameters.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-CNVMetricInternalMethods.R
tests/testthat/test-CNVMetricMethods.R
tests/testthat/test-CNVMetricsLog2ratioInternalMethods.R
tests/testthat/test-CNVMetricsOverlapInternalMethods.R
tests/testthat/test-CNVMetricsSimulationMethods.R
tests/testthat/test-genericCNVMetric.R
vignettes/CNVMetrics.Rmd
vignettes/CNVMetrics.bibtex
vignettes/CNVMetrics_partial_workflow_v10.png
vignettes/CNVMetrics_text.jpg
vignettes/CNV_mM30_mM10_v03_Feb_08_2021.jpeg
vignettes/CNV_mM30_mM10_v03_Feb_08_2021_small.png
vignettes/Input_CNV_call_300ppi_v02_low_quality.jpg
vignettes/Input_CNV_log2ratio_v01_low_quality.jpg
vignettes/Simulation_chromosome_workflow_part02_v03.png
vignettes/Simulation_chromosome_workflow_part_01_v03.png
