Man pages for KrasnitzLab/CNVMetrics
Copy Number Variant Metrics

calculateJaccardCalculate Jaccard metric
calculateLog2ratioMetricCalculate metric using overlapping amplified/deleted regions
calculateOneLog2valueMetricTCalculate metric using the log2ratio values between two...
calculateOneOverlapMetricTCalculate metric using overlapping amplified/deleted regions...
calculateOverlapMetricCalculate metric using overlapping amplified/deleted regions
calculateSorensenCalculate Sorensen metric
calculateSzymkiewiczCalculate Szymkiewicz-Simpson metric
calculateWeightedEuclideanDistanceFor2SamplesCalculate Weighted Euclidean distance-based metric between...
CNVMetrics-packageCNVMetrics: Copy number variant metrics
createDisjoinSegmentsForTwoSamplesGenerate common segments to enable calculation of metrics on...
is.CNVMetricIs an object of class 'CNVMetric'
plotMetricPlot metrics present in a 'CNVMetric' object
plotOneMetricPlot one graph related to one set of metrics.
print.CNVMetricPrint CNVMetric object
processChrTODO
processSimGenerate simulated samples with copy number profiles derived...
simChrGenerate a simulated chromosome based on a reference sample
validatecalculateLog2ratioMetricParametersParameters validation for the 'calculateLog2ratioMetric'...
validateCalculateOverlapMetricParametersParameters validation for the 'calculateOverlapMetric'...
KrasnitzLab/CNVMetrics documentation built on July 30, 2023, 2:22 p.m.