Man pages for KrasnitzLab/CNVMetrics
Copy Number Variant Metrics
| calculateJaccard | Calculate Jaccard metric |
| calculateLog2ratioMetric | Calculate metric using overlapping amplified/deleted regions |
| calculateOneLog2valueMetricT | Calculate metric using the log2ratio values between two... |
| calculateOneOverlapMetricT | Calculate metric using overlapping amplified/deleted regions... |
| calculateOverlapMetric | Calculate metric using overlapping amplified/deleted regions |
| calculateSorensen | Calculate Sorensen metric |
| calculateSzymkiewicz | Calculate Szymkiewicz-Simpson metric |
| calculateWeightedEuclideanDistanceFor2Samples | Calculate Weighted Euclidean distance-based metric between... |
| CNVMetrics-package | CNVMetrics: Copy number variant metrics |
| createDisjoinSegmentsForTwoSamples | Generate common segments to enable calculation of metrics on... |
| is.CNVMetric | Is an object of class 'CNVMetric' |
| plotMetric | Plot metrics present in a 'CNVMetric' object |
| plotOneMetric | Plot one graph related to one set of metrics. |
| print.CNVMetric | Print CNVMetric object |
| processChr | TODO |
| processSim | Generate simulated samples with copy number profiles derived... |
| simChr | Generate a simulated chromosome based on a reference sample |
| validatecalculateLog2ratioMetricParameters | Parameters validation for the 'calculateLog2ratioMetric'... |
| validateCalculateOverlapMetricParameters | Parameters validation for the 'calculateOverlapMetric'... |
