README.md

In LCBC-UiO/ggsegChen: Chen datasets for the ggseg-plotting tool

ggsegChen

This package contains dataset for plotting the Chen thickness and areal cortical atlas ggseg and ggseg3d.

Chen et al. (2013) PNAS, 110 (42) 17089-17094; pubmed

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

# Enable this universe
options(repos = c(
    ggseg = 'https://ggseg.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('ggsegChen')

You can install the released version of ggsegChen from GitHub with:

# install.packages("remotes")
remotes::install_github("LCBC-UiO/ggsegChen")

Example

This is a basic example which shows you how to solve a common problem:

library(ggsegChen)

library(ggseg)
#> Warning: package 'ggseg' was built under R version 4.1.1
#> Loading required package: ggplot2
library(ggplot2)

plot(chenAr) +
  labs(title = "Chen areal (chenAr)") +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 3))

plot(chenTh) +
  labs(title = "Chen thickness (chenTh)") +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 2))

Please note that the ‘ggsegChen’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

LCBC-UiO/ggsegChen documentation built on Dec. 31, 2021, 2:19 a.m.