mri_annotation2label: Convert annotation to label

In LCBC-UiO/ggsegExtra: Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools

Convert annotation to label

Description

Calls FreeSurfer's mri_annotation2label to split an annotation file into several labels.

Usage

mri_annotation2label(
  annot_name,
  subject = "fsaverage5",
  hemisphere = "lh",
  output_dir = fs_subj_dir(),
  verbose = TRUE,
  opts = NULL
)

Arguments

annot_name	annotation name. File should exist in subjects label directory
subject	Freesurfer subject, must exist in whatever subject directory specified or set in the environment with $SUBJECTS_DIR
hemisphere	hemisphere, either "rh" or "lh"
output_dir	output directory path
verbose	logical indicating to be verbose or not
opts	other arguments to freesurfer command

Value

nothing. Runs command line to write label files

Examples

if(freesurfer::have_fs()){
# for freesurfer help see:
freesurfer::fs_help("mri_annotation2label")
mri_annotation2label(annot_name = "aparc")

mri_annotation2label(annot_name = "aparc.a2009s")

mri_annotation2label(subject = "fsaverage", annot_name = "aparc.a2009s")
}

LCBC-UiO/ggsegExtra documentation built on May 9, 2022, 1:07 a.m.