README.md

In LCBC-UiO/ggsegJHU: JHU datasets for the ggseg-plotting tool

ggsegJHU

Contains data for ggseg and ggseg3d for the JHU white matter segmentation.

Hua et al. (2008) NeuroImage, 39(1):336-347 pubmed

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

# Enable this universe
options(repos = c(
    ggseg = 'https://ggseg.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('ggsegJHU')

You can install the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("LCBC-UiO/ggsegJHU")

Example

This is a basic example which shows you how to solve a common problem:

library(ggsegJHU)

library(ggseg)
library(ggplot2)

plot(jhu) +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 7)) +
  guides(fill = guide_legend(ncol = 2))

library(ggseg3d)
library(dplyr)

ggseg3d(atlas = jhu_3d) %>% 
  add_glassbrain("left") %>% 
  pan_camera("right lateral")

Please note that the ‘ggsegJHU’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

LCBC-UiO/ggsegJHU documentation built on June 8, 2021, 7:53 a.m.