API for LTLA/BiocSingular
Singular Value Decomposition for Bioconductor Packages

Global functions
%*%,ANY,DeferredMatrix-method Man page
%*%,ANY,ResidualMatrix-method Man page
%*%,DeferredMatrix,ANY-method Man page
%*%,DeferredMatrix,DeferredMatrix-method Man page
%*%,ResidualMatrix,ANY-method Man page
%*%,ResidualMatrix,ResidualMatrix-method Man page
.FUN_GENERATOR Source code
.bpisup2 Source code
.compute_center_and_scale Source code
.cross_DeferredMatrix Source code
.crossprod_ResidualMatrix Source code
.dual_mult_dispatcher Source code
.internal_mult_special Source code
.internal_tcrossprod Source code
.leftcross_DeferredMatrix Source code
.leftcross_ResidualMatrix Source code
.leftmult_DeferredMatrix Source code
.leftmult_ResidualMatrix Source code
.lefttcp_DeferredMatrix Source code
.lefttcp_ResidualMatrix Source code
.multiply_t2u Source code
.multiply_u2t Source code
.multiply_u2u Source code
.rightcross_DeferredMatrix Source code
.rightcross_ResidualMatrix Source code
.rightmult_DeferredMatrix Source code
.rightmult_ResidualMatrix Source code
.righttcp_DeferredMatrix Source code
.righttcp_ResidualMatrix Source code
.tcp_DeferredMatrix Source code
.tcp_ResidualMatrix Source code
.update_scale Source code
BiocSingular-options Man page
BiocSingularParam-class Man page
DeferredMatrix Man page Source code
DeferredMatrix-class Man page
DeferredMatrixSeed Man page Source code
DeferredMatrixSeed-class Man page
DelayedArray,DeferredMatrixSeed-method Man page
DelayedArray,LowRankMatrixSeed-method Man page
DelayedArray,ResidualMatrixSeed-method Man page
ExactParam Man page Source code
ExactParam-class Man page
FastAutoParam Man page Source code
FastAutoParam-class Man page
IrlbaParam Man page Source code
IrlbaParam-class Man page
LowRankMatrix Man page Source code
LowRankMatrix-class Man page
LowRankMatrixSeed Man page Source code
LowRankMatrixSeed-class Man page
RandomParam Man page Source code
RandomParam-class Man page
ResidualMatrix Man page Source code
ResidualMatrix-class Man page
ResidualMatrixSeed Man page Source code
ResidualMatrixSeed-class Man page
[,DeferredMatrix,ANY,ANY,ANY-method Man page
[,LowRankMatrix,ANY,ANY,ANY-method Man page
[,ResidualMatrix,ANY,ANY,ANY-method Man page
bsargs Source code
bsdeferred Man page Source code
bsfold Man page Source code
bsparam Man page Source code
check_numbers Source code
colMeans,DeferredMatrix-method Man page
colMeans,ResidualMatrix-method Man page
colSums,DeferredMatrix-method Man page
colSums,ResidualMatrix-method Man page
compute_scale Source code
crossprod,ANY,DeferredMatrix-method Man page
crossprod,ANY,ResidualMatrix-method Man page
crossprod,DeferredMatrix,ANY-method Man page
crossprod,DeferredMatrix,DeferredMatrix-method Man page
crossprod,DeferredMatrix,missing-method Man page
crossprod,ResidualMatrix,ANY-method Man page
crossprod,ResidualMatrix,ResidualMatrix-method Man page
crossprod,ResidualMatrix,missing-method Man page
dim,DeferredMatrixSeed-method Man page
dim,LowRankMatrixSeed-method Man page
dim,ResidualMatrixSeed-method Man page
dimnames,DeferredMatrixSeed-method Man page
dimnames,LowRankMatrixSeed-method Man page
dimnames,ResidualMatrixSeed-method Man page
dimnames<-,DeferredMatrix,ANY-method Man page
dimnames<-,LowRankMatrix,ANY-method Man page
dimnames<-,ResidualMatrix,ANY-method Man page
extract_array,DeferredMatrixSeed-method Man page
extract_array,LowRankMatrixSeed-method Man page
extract_array,ResidualMatrixSeed-method Man page
get_Q Source code
get_Qty Source code
get_center Source code
get_components Source code
get_matrix2 Source code
get_rotation Source code
get_scale Source code
ip_extra Source code
is_centered Source code
is_transposed Source code
realize_DeferredMatrixSeed Source code
rename_DeferredMatrixSeed Source code
rename_LowRankMatrixSeed Source code
rename_ResidualMatrixSeed Source code
rowMeans,DeferredMatrix-method Man page
rowMeans,ResidualMatrix-method Man page
rowSums,DeferredMatrix-method Man page
rowSums,ResidualMatrix-method Man page
runExactSVD Man page Source code
runIrlbaSVD Man page Source code
runPCA Man page
runPCA,ANY-method Man page
runPCA,ResidualMatrix-method Man page
runRandomSVD Man page Source code
runSVD Man page
runSVD,ExactParam-method Man page
runSVD,FastAutoParam-method Man page
runSVD,IrlbaParam-method Man page
runSVD,RandomParam-method Man page
runSVD,missing-method Man page
safe_rsvd Source code
safe_svd Source code
show,BiocSingularParam-method Man page
show,DeferredMatrixSeed-method Man page
show,IrlbaParam-method Man page
show,LowRankMatrixSeed-method Man page
show,RandomParam-method Man page
show,ResidualMatrixSeed-method Man page
standardize_matrix Source code
standardize_output_SVD Source code
subset_DeferredMatrixSeed Source code
subset_LowRankMatrixSeed Source code
subset_ResidualMatrixSeed Source code
svd_via_crossprod Source code
t,DeferredMatrix-method Man page
t,LowRankMatrix-method Man page
t,ResidualMatrix-method Man page
tcrossprod,ANY,DeferredMatrix-method Man page
tcrossprod,ANY,ResidualMatrix-method Man page
tcrossprod,DeferredMatrix,ANY-method Man page
tcrossprod,DeferredMatrix,DeferredMatrix-method Man page
tcrossprod,DeferredMatrix,missing-method Man page
tcrossprod,ResidualMatrix,ANY-method Man page
tcrossprod,ResidualMatrix,ResidualMatrix-method Man page
tcrossprod,ResidualMatrix,missing-method Man page
transpose_DeferredMatrixSeed Source code
transpose_LowRankMatrixSeed Source code
transpose_ResidualMatrixSeed Source code
use_center Source code
use_crossprod Source code
use_scale Source code
LTLA/BiocSingular documentation built on Dec. 24, 2019, 9:23 p.m.