|averagePseudotime||Compute the average pseudotime|
|createClusterMST||Minimum spanning trees on cluster centroids|
|defineMSTPaths||Define paths through the MST|
|guessMSTRoots||Guess the roots of a MST|
|PseudotimeOrdering||The PseudotimeOrdering class|
|rowmean||Compute column means based on a grouping variable|
|splitByBranches||Split a graph into branch-free paths|
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