defaults: Defaults for 'biocconda'

In LTLA/basilisk.utils: Centralized Conda Installation for Bioconductor Packages

Defaults for biocconda

Description

Defaults for biocconda

Usage

defaultCommand()

defaultDownloadVersion()

defaultMinimumVersion()

defaultCacheDirectory()

Details

The BIOCCONDA_CONDA_COMMAND environment variable will override the default setting of defaultCommand.

The BIOCCONDA_CONDA_DOWNLOAD_VERSION environment variable will override the default setting of defaultDownloadVersion.

The BIOCCONDA_CONDA_MINIMUM_VERSION environment variable will override the default setting of defaultMinimumVersion.

The BIOCCONDA_CONDA_CACHE_DIRECTORY environment variable will override the default setting of defaultCacheDirectory.

Value

For defaultCommand, a string specifying the expected command-line invocation of an existing conda installation.

For defaultDownloadVersion, a string specifying the version of conda to download if no existing installation can be found.

For defaultMinimumVersion, a string specifying the minimum version of an existing conda installation.

For defaultCacheDirectory, a string containing the path to the cache directory for biocconda-managed conda installations.

Author(s)

Aaron Lun

Examples

defaultCommand()
defaultDownloadVersion()
defaultMinimumVersion()
defaultCacheDirectory()

LTLA/basilisk.utils documentation built on June 11, 2025, 8:56 a.m.