cnetPlotly: Genes are gathered from enrichment result from specific...

View source: R/enrichment.R

cnetPlotlyR Documentation

Genes are gathered from enrichment result from specific pathway. The geneList is prepared with the right LogFC values and links of genes between multiple pathways. The number of pathways that are shown is defined with cnet_slider. Igraph object is made to create links of genes between multiple pathways. Colors of dots are based on LogFC.

Description

Genes are gathered from enrichment result from specific pathway. The geneList is prepared with the right LogFC values and links of genes between multiple pathways. The number of pathways that are shown is defined with cnet_slider. Igraph object is made to create links of genes between multiple pathways. Colors of dots are based on LogFC.

Usage

cnetPlotly(enrich, geneSets, deTab)

Arguments

enrich

Enrich result, A enrichment results

geneSets

Martrix object, containing all pathways with corresponding genes

deTab

Dataframe, with all analysis results

Value

g, (Igraph object) containing links of genes multiple pathways


LUMC/DGE_analysis documentation built on Aug. 12, 2022, 11:04 p.m.