diagnoses_table: A tidyUkBioBank function Function output: a table with an eid...

In Lab-Jaiswal/tidyUkBioBank: What the Package Does (One Line, Title Case)

A tidyUkBioBank function Function output: a table with an eid columns, columns pertaining to specific icd/ self reported/ cause of death codes, and a column for all previously mentioned disease indicators (combined) The columns with disease indicators contain 1's and 0's to represent whether the eid has the icd code, etc. of interest (1) or not (0)

Description

A tidyUkBioBank function Function output: a table with an eid columns, columns pertaining to specific icd/ self reported/ cause of death codes, and a column for all previously mentioned disease indicators (combined) The columns with disease indicators contain 1's and 0's to represent whether the eid has the icd code, etc. of interest (1) or not (0)

Usage

diagnoses_table(icd_list, ukb_data, ...)

Arguments

icd_list	list of icd codes
ukb_data	the originial phenotype dataframe containing all individuals in the ukbiobank (~500,000 cols x 18,000 rows as of 09/07/2021)
self_reported	optional. if the user requests self reported diagnoses, then type self_reported = sr_list, where sr_list contains the self_reported codes of interest
cause_of_death	optional. if the user requests cause_of_death diagnoses, then type cause_of_death = cod_list, where cod_list contains the cause of death of interest

Examples

diagnoses_table()

Lab-Jaiswal/tidyUkBioBank documentation built on Sept. 10, 2023, 5:13 p.m.