Man pages for Lagaillette/RRicePackage
rRice package to make easier the study of the genomic of rice

addAttribute-methodsAdd an attribute to an object.
alreadyUsedDB-functionFunction checking if the database is already used
analyseDataDB7-functionanalyseDataDB7
callCreationGeneDB10-functioncallCreationGeneDB10
callCreationGeneDB1-functioncallCreationGeneDB1
callCreationGeneDB2-functioncallCreationGeneDB2
callCreationGeneDB3-functioncallCreationGeneDB3
callCreationGeneDB4-functioncallCreationGeneDB4
callCreationGeneDB5-functioncallCreationGeneDB5
callCreationGeneDB6-functioncallCreationGeneDB6
callCreationGeneDB7-functioncallCreationGeneDB7
callCreationGeneDB8-functioncallCreationGeneDB8
callCreationGeneDB9-functioncallCreationGeneDB9
callDB10-functioncallDB10
callDB1-functioncallDB1
callDB2-functioncallDB2
callDB3-functioncallDB3
callDB4-functioncallDB4
callDB5-functioncallDB5
callDB6-functioncallDB6
callDB7-functioncallDB7
callDB8-functioncallDB8
callDB9-functioncallDB9
callExecutablePy-functioncallExecutablePy
callSnpSeek-functionCallSnpSeek
changeDBNameIntoNumber-functionFunction to know the number of the database associate to the...
changeNumberIntoDBName-functionFunction to know the the name of the database associate to...
createAttributesVector-functionFunction to create the vector of the attributes you want from...
createExperiment-functionFunction to create an Experiment
creationGeneDB10-functioncreationGeneDB10
creationGeneDB1-functioncreationGeneDB1
creationGeneDB2-functioncreationGeneDB2
creationGeneDB3-functioncreationGeneDB3
creationGeneDB4-functioncreationGeneDB4
creationGeneDB5-functioncreationGeneDB5
creationGeneDB6-functioncreationGeneDB6
creationGeneDB7-functioncreationGeneDB7
creationGeneDB8-functioncreationGeneDB8
creationGeneDB9-functioncreationGeneDB9
databasesAvailables-functionFunction to know the number of databases availables
databasesList-functionFunction for see the list of the databases we can call
deleteAttribute-methodsDelete an attribute which has been add by the user.
dlPythonModules-functiondlPythonModules
existsGene-functionFunction that allows to know if a gene already exists or not
Experiment-classAn S4 class to represent an Experiment class.
Funricigenes2-classAn S4 class to represent the Gene database Funricigenes 2
Funricigenes3-classAn S4 class to represent the Gene database Funricigenes 3
Funricigenes-classAn S4 class to represent the Gene database Funricigenes
Gene-classAn S4 class to represent a Gene.
getAttributes-functionFunction for see the list of the attributes of the class
getAttributesNames-methodsGet the attribute names of an object.
getDate-methodsGet the date of an object
getDBGenes-methodsGet all the genes of the data base you want.
getGenes-methodsGet the genes of an object
getId-methodsGet the id of an object
getIds-functiongetIds
getLocus-methodsGet the locus of an object
getName-methodsGet the name of an object
getOutPutJSON-functionFunction for a JSON return
getProperties-methodsget the properties you want to keep
Gramene-classAn S4 class to represent the Gene database Gramene
IC4R-classAn S4 class to represent Gene database IC4R.
id-functionid
listDB-functionFunction to know the list of the databases availables
makeList-functionmakeList
MSU-classAn S4 class to represent the Gene database MSU
noDoubleIds-functionnoDoubleIds
Oryzabase-classAn S4 class to represent the third database Gene.
PLANTTFDB-classAn S4 class to represent the Gene database PLANTTFDB
PLNTFDB-classAn S4 class to represent the Gene database Funricigenes 2.
RAPDB-classAn S4 class to represent the first database Gene.
returnError-functionFunction which returns only the right errors
selectProperties-methodsselect the properties you want to study
setDate-methodsSet the date of an object
setName-methodsSet the name of an object
updateObject-methodsUpdate an attribute of an object
whichOS-functionFunction to know the OS using the package
Lagaillette/RRicePackage documentation built on Aug. 12, 2017, 7:44 a.m.