Man pages for LaraSellesVidal/ncRNAtools
An R toolkit for non-coding RNA
| findPairedBases | Determines paired bases from secondary structure string |
| flattenDotBracket | Converts an extended Dot-Bracket secondary structure to basic... |
| generatePairsProbabilityMatrix | Generates a matrix of base pair probabilities |
| pairsToSecondaryStructure | Generates a string with the secondary structure of an RNA... |
| plotCompositePairsMatrix | Plots a composite matrix of base pair probabilities and... |
| plotPairsProbabilityMatrix | Plots a matrix of base pair probabilities |
| predictAlternativeSecondaryStructures | Predicts alternative secondary structures of a given RNA... |
| predictSecondaryStructure | Predicts the secondary structure of a given RNA sequence |
| readCT | Reads a file with the secondary structure of an RNA in the CT... |
| readDotBracket | Reads a file with the sequence and secondary structure of an... |
| rnaCentralGenomicCoordinatesSearch | Retrieves annotated non-coding RNA in a set of genomic ranges |
| rnaCentralRetrieveEntry | Retrieves information for a specific entry of the RNAcentral... |
| rnaCentralTextSearch | Searches the RNAcentral database with a text query |
| writeCT | Writes a file with the secondary structure of an RNA in the... |
| writeDotBracket | Writes a file with the sequence and secondary structure of an... |
