allotope_human: Function of human peptide prediction.

In LarsenLab/immuntools: Larsen lab data analysis toolbox

Function of human peptide prediction.

Description

Function of human peptide prediction.

Usage

allotope_human(
  don_ag = c("DQB1_05_01", "DQB1_06_02"),
  self_ag = c("DQB1_03_01", "DQB1_03_01"),
  present_ag = c("DRB1_08_03", "DRB1_04_01"),
  seq_len = "15",
  out_name = "allotope_report.html",
  align_plot = FALSE
)

Arguments

don_ag	donor antigens.
self_ag	self antigens.
present_ag	presenting alleles.
seq_len	sequence length.
out_name	name and path of html report.
align_plot	whether or not plot alignment plots, default is FALSE.

Value

an html report

Examples

## Not run: 
allotope_human(don_ag = c("DQB1_05_01", "DQB1_06_02"),
self_ag = c("DQB1_03_01", "DQB1_03_01"),
present_ag = c("DRB1_08_03", "DRB1_04_01"),
seq_len = '15',
out_name = '~/projects/allotope_report.html'),
align_plot = FALSE

## End(Not run)

LarsenLab/immuntools documentation built on July 19, 2023, 9:43 a.m.