Files in LeoStafu/metaDAF
Metagenomics tools for detecting Differentially Abundant Features
DESCRIPTION
NAMESPACE
R/build_DAF_data.R
R/data.R
R/generate_curve_data.R
R/generate_differences.R
R/generate_repeated_DAF_data.R
R/plots_functions.R
R/preprocess_DAF_data.R
R/process_ALDEx2.R
R/process_DESeq2.R
R/process_RAIDA.R
R/process_ZIBseq.R
R/process_edgeR.R
R/process_mbzinb.R
R/process_metagenomeSeq.R
R/process_voom.R
R/process_wilcox.R
R/rank_features.R
R/run_DAF_analysis.R
R/select_process.R
R/sysdata.rda
README.Rmd
README.md
_pkgdown.yml
data/HMP_2012_metadata.RData
data/HMP_2012_table_count.RData
data/QinJ_2012_metadata.RData
data/QinJ_2012_table_count.RData
data/ZellerG_2014_metadata.RData
data/ZellerG_2014_table_count.RData
docs/articles/index.html
docs/articles/metaDAF.html
docs/articles/metaDAF_files/figure-html/unnamed-chunk-4-1.png
docs/articles/metaDAF_files/figure-html/unnamed-chunk-5-1.png
docs/articles/metaDAF_files/figure-html/unnamed-chunk-6-1.png
docs/articles/method_comparison_repetitions.html
docs/articles/method_comparison_repetitions_files/figure-html/example2-1.png
docs/articles/method_comparison_repetitions_files/figure-html/unnamed-chunk-2-1.png
docs/articles/method_comparison_repetitions_files/figure-html/unnamed-chunk-2-2.png
docs/articles/method_comparison_repetitions_files/figure-html/unnamed-chunk-2-3.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/HMP_2012_metadata.html
docs/reference/HMP_2012_table_count.html
docs/reference/QinJ_2012_metadata.html
docs/reference/QinJ_2012_table_count.html
docs/reference/ZellerG_2014_metadata.html
docs/reference/ZellerG_2014_table_count.html
docs/reference/boxplot_AUC.html
docs/reference/build_DAF_data.html
docs/reference/curve_plot.html
docs/reference/figures/README-example-1.png
docs/reference/figures/README-example2-1.png
docs/reference/figures/README-unnamed-chunk-1-1.png
docs/reference/figures/README-unnamed-chunk-1-2.png
docs/reference/figures/README-unnamed-chunk-1-3.png
docs/reference/generate_curve_data.html
docs/reference/generate_differences.html
docs/reference/generate_repeated_DAF_data.html
docs/reference/index.html
docs/reference/preprocess_DAF_data.html
docs/reference/process_ALDEx2.html
docs/reference/process_DESeq2.html
docs/reference/process_RAIDA.html
docs/reference/process_ZIBseq.html
docs/reference/process_edgeR.html
docs/reference/process_mbzinb.html
docs/reference/process_metagenomeSeq.html
docs/reference/process_voom.html
docs/reference/process_wilcox.html
docs/reference/run_DAF_analysis.html
docs/reference/select_process.html
man/HMP_2012_metadata.Rd
man/HMP_2012_table_count.Rd
man/QinJ_2012_metadata.Rd
man/QinJ_2012_table_count.Rd
man/ZellerG_2014_metadata.Rd
man/ZellerG_2014_table_count.Rd
man/boxplot_AUC.Rd
man/boxplot_rank.Rd
man/build_DAF_data.Rd
man/curve_plot.Rd
man/figures/README-example-1.png
man/figures/README-example2-1.png
man/figures/README-unnamed-chunk-1-1.png
man/figures/README-unnamed-chunk-1-2.png
man/figures/README-unnamed-chunk-1-3.png
man/generate_curve_data.Rd
man/generate_differences.Rd
man/generate_repeated_DAF_data.Rd
man/preprocess_DAF_data.Rd
man/process_ALDEx2.Rd
man/process_DESeq2.Rd
man/process_RAIDA.Rd
man/process_ZIBseq.Rd
man/process_edgeR.Rd
man/process_mbzinb.Rd
man/process_metagenomeSeq.Rd
man/process_voom.Rd
man/process_wilcox.Rd
man/rank_features.Rd
man/run_DAF_analysis.Rd
man/select_process.Rd
metaDAF.Rproj
metaDAF_0.8.tar.gz
test/run_test1.R
vignettes/.gitignore
vignettes/metaDAF.Rmd
vignettes/metaDAF_files/figure-html/unnamed-chunk-4-1.png
vignettes/metaDAF_files/figure-html/unnamed-chunk-5-1.png
vignettes/metaDAF_files/figure-html/unnamed-chunk-6-1.png
vignettes/method_comparison_repetitions.Rmd
