R/data.R

In LeoStafu/metaDAF: Metagenomics tools for detecting Differentially Abundant Features

#' Zeller 2014 study metadata
#'
#' Metadata of the Zeller2014 dataset provided with the
#' \code{curatedMetagenomicData} package.
#'
#' Study of the link between microbiome and colorectal cancer.
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"ZellerG_2014_metadata"

# ---------------------------------------------------------
#' Zeller 2014 count table
#'
#' Count table of the Zeller2014 dataset provided with the
#' \code{curatedMetagenomicData} package.
#'
#' Study of the link between microbiome and colorectal cancer.
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"ZellerG_2014_table_count"

# ---------------------------------------------------------
#' HMP 2012 metadata
#'
#' Human Microbiome Project 2012 - Metadata provided with the
#' \code{curatedMetagenomicData} package.
#'
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"HMP_2012_metadata"

# ---------------------------------------------------------
#' HMP 2012 table count
#'
#' Human Microbiome Project 2012 - Count table provided with the
#' \code{curatedMetagenomicData} package.
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"HMP_2012_table_count"

# ---------------------------------------------------------
#' Qin 2012 metadata
#'
#' Metadata of the Qin2012 dataset provided with the
#' \code{curatedMetagenomicData} package.
#'
#' Study of the link between microbiome and type 2 diabetes.
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"QinJ_2012_metadata"

# ---------------------------------------------------------
#' Qin 2012 table count
#'
#' Count table of the Qin2012 dataset provided with the
#' \code{curatedMetagenomicData} package.
#'
#' Study of the link between microbiome and type 2 diabetes.
#'
#' @source \url{https://www.bioconductor.org/packages/3.4/data/experiment/html/curatedMetagenomicData.html}
"QinJ_2012_table_count"