| $,SummarizedExperiment-method |
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| $<-,SummarizedExperiment-method |
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| Assays |
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| Assays-class |
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| AssaysInEnv |
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| AssaysInEnv-class |
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| Compare,ANY,RangedSummarizedExperiment-method |
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| Compare,RangedSummarizedExperiment,ANY-method |
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| Compare,RangedSummarizedExperiment,RangedSummarizedExperiment-me |
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| KALLISTO_ASSAYS |
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| RangedSummarizedExperiment |
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| RangedSummarizedExperiment-class |
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| ShallowData |
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| ShallowData-class |
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| ShallowSimpleListAssays |
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| ShallowSimpleListAssays-class |
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| SimpleListAssays |
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| SimpleListAssays-class |
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| SummarizedExperiment |
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| SummarizedExperiment,ANY-method |
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| SummarizedExperiment,SimpleList-method |
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| SummarizedExperiment,list-method |
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| SummarizedExperiment,missing-method |
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| SummarizedExperiment-class |
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| [,Assays,ANY,ANY,ANY-method |
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| [,Assays,ANY-method |
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| [,SummarizedExperiment,ANY,ANY,ANY-method |
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| [,SummarizedExperiment,ANY-method |
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| [,SummarizedExperiment-method |
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| [<-,Assays,ANY,ANY,ANY-method |
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| [<-,SummarizedExperiment,ANY,ANY,SummarizedExperiment-method |
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| [[,Assays,ANY,ANY-method |
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| [[,AssaysInEnv,ANY,ANY-method |
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| [[,SummarizedExperiment,ANY,missing-method |
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| [[<-,Assays,ANY,ANY-method |
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| [[<-,AssaysInEnv,ANY,ANY-method |
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| [[<-,SummarizedExperiment,ANY,missing-method |
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| acbind,Matrix-method |
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| arbind,Matrix-method |
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| assay |
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| assay,SummarizedExperiment,character-method |
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| assay,SummarizedExperiment,missing-method |
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| assay,SummarizedExperiment,numeric-method |
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| assay<- |
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| assay<-,SummarizedExperiment,character-method |
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| assay<-,SummarizedExperiment,missing-method |
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| assay<-,SummarizedExperiment,numeric-method |
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| assayNames |
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| assayNames,SummarizedExperiment-method |
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| assayNames<- |
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| assayNames<-,SummarizedExperiment,character-method |
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| assays |
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| assays,SummarizedExperiment-method |
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| assays<- |
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| assays<-,SummarizedExperiment,SimpleList-method |
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| assays<-,SummarizedExperiment,list-method |
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| cbind,Assays-method |
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| cbind,SummarizedExperiment-method |
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| class:Assays |
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| class:AssaysInEnv |
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| class:RangedSummarizedExperiment |
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| class:ShallowData |
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| class:ShallowSimpleListAssays |
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| class:SimpleListAssays |
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| class:SummarizedExperiment |
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| coerce,AssaysInEnv,SimpleList-method |
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| coerce,ExpressionSet,RangedSummarizedExperiment-method |
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| coerce,ExpressionSet,SummarizedExperiment-method |
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| coerce,RangedSummarizedExperiment,ExpressionSet-method |
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| coerce,RangedSummarizedExperiment,SummarizedExperiment-method |
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| coerce,ShallowSimpleListAssays,SimpleList-method |
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| coerce,SimpleList,AssaysInEnv-method |
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| coerce,SimpleList,ShallowSimpleListAssays-method |
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| coerce,SummarizedExperiment,ExpressionSet-method |
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| coerce,SummarizedExperiment,RangedSummarizedExperiment-method |
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| colData |
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| colData,SummarizedExperiment-method |
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| colData<- |
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| colData<-,SummarizedExperiment,DataFrame-method |
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| coverage |
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| coverage,RangedSummarizedExperiment-method |
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| coverage-methods |
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| dim,Assays-method |
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| dim,SummarizedExperiment-method |
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| dimnames,RangedSummarizedExperiment-method |
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| dimnames,SummarizedExperiment-method |
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| dimnames<-,RangedSummarizedExperiment,list-method |
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| dimnames<-,SummarizedExperiment,NULL-method |
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| dimnames<-,SummarizedExperiment,list-method |
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| disjointBins |
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| disjointBins,RangedSummarizedExperiment-method |
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| distance |
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| distance,ANY,RangedSummarizedExperiment-method |
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| distance,RangedSummarizedExperiment,ANY-method |
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| distance,RangedSummarizedExperiment,RangedSummarizedExperiment-m |
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| distanceToNearest |
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| distanceToNearest,ANY,RangedSummarizedExperiment-method |
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| distanceToNearest,RangedSummarizedExperiment,ANY-method |
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| distanceToNearest,RangedSummarizedExperiment,RangedSummarizedExp |
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| duplicated,RangedSummarizedExperiment-method |
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| elementMetadata,RangedSummarizedExperiment-method |
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| elementMetadata<-,RangedSummarizedExperiment-method |
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| end,RangedSummarizedExperiment-method |
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| end<-,RangedSummarizedExperiment-method |
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| extractROWS,SummarizedExperiment,ANY-method |
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| findOverlaps |
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| findOverlaps,RangedSummarizedExperiment,RangedSummarizedExperime |
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| findOverlaps,RangedSummarizedExperiment,Vector-method |
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| findOverlaps,Vector,RangedSummarizedExperiment-method |
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| findOverlaps-methods |
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| flank |
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| flank,RangedSummarizedExperiment-method |
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| follow |
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| follow,ANY,RangedSummarizedExperiment-method |
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| follow,RangedSummarizedExperiment,ANY-method |
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| follow,RangedSummarizedExperiment,RangedSummarizedExperiment-met |
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| geneRangeMapper |
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| granges,RangedSummarizedExperiment-method |
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| inter-range-methods |
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| intra-range-methods |
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| is.unsorted,RangedSummarizedExperiment-method |
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| isDisjoint |
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| isDisjoint,RangedSummarizedExperiment-method |
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| length,Assays-method |
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| length,AssaysInEnv-method |
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| length,SummarizedExperiment-method |
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| makeSummarizedExperimentFromDataFrame |
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| makeSummarizedExperimentFromExpressionSet |
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| makeSummarizedExperimentFromLoom |
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| mcols,RangedSummarizedExperiment-method |
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| mcols<-,RangedSummarizedExperiment-method |
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| naiveRangeMapper |
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| names,Assays-method |
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| names,AssaysInEnv-method |
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| names,RangedSummarizedExperiment-method |
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| names,SummarizedExperiment-method |
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| names<-,Assays-method |
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| names<-,AssaysInEnv-method |
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| names<-,RangedSummarizedExperiment-method |
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| names<-,SummarizedExperiment-method |
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| narrow |
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| narrow,RangedSummarizedExperiment-method |
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| nearest |
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| nearest,ANY,RangedSummarizedExperiment-method |
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| nearest,RangedSummarizedExperiment,ANY-method |
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| nearest,RangedSummarizedExperiment,RangedSummarizedExperiment-me |
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| nearest-methods |
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| order,RangedSummarizedExperiment-method |
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| pcompare,ANY,RangedSummarizedExperiment-method |
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| pcompare,RangedSummarizedExperiment,ANY-method |
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| pcompare,RangedSummarizedExperiment,RangedSummarizedExperiment-m |
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| precede |
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| precede,ANY,RangedSummarizedExperiment-method |
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| precede,RangedSummarizedExperiment,ANY-method |
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| precede,RangedSummarizedExperiment,RangedSummarizedExperiment-me |
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| probeRangeMapper |
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| promoters |
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| promoters,RangedSummarizedExperiment-method |
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| ranges,RangedSummarizedExperiment-method |
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| ranges<-,RangedSummarizedExperiment-method |
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| rank,RangedSummarizedExperiment-method |
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| rbind,Assays-method |
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| rbind,SummarizedExperiment-method |
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| readKallisto |
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| readKallistoBootstrap |
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| realize,SummarizedExperiment-method |
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| replaceROWS,SummarizedExperiment-method |
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| resize |
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| resize,RangedSummarizedExperiment-method |
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| restrict |
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| restrict,RangedSummarizedExperiment-method |
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| rowData |
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| rowData,SummarizedExperiment-method |
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| rowData<- |
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| rowData<-,SummarizedExperiment-method |
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| rowRanges |
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| rowRanges,RangedSummarizedExperiment-method |
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| rowRanges,SummarizedExperiment-method |
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| rowRanges<- |
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| rowRanges<-,RangedSummarizedExperiment,NULL-method |
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| rowRanges<-,SummarizedExperiment,GRangesList-method |
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| rowRanges<-,SummarizedExperiment,GenomicRanges-method |
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| rowRanges<-,SummarizedExperiment,NULL-method |
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| seqinfo,RangedSummarizedExperiment-method |
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| seqinfo<-,RangedSummarizedExperiment-method |
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| seqnames,RangedSummarizedExperiment-method |
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| shift |
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| shift,RangedSummarizedExperiment-method |
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| show,SummarizedExperiment-method |
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| sort,RangedSummarizedExperiment-method |
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| split,RangedSummarizedExperiment,ANY-method |
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| split,RangedSummarizedExperiment-method |
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| start,RangedSummarizedExperiment-method |
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| start<-,RangedSummarizedExperiment-method |
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| strand,RangedSummarizedExperiment-method |
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| strand<-,RangedSummarizedExperiment,ANY-method |
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| subset,RangedSummarizedExperiment-method |
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| subset,SummarizedExperiment-method |
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| trim,RangedSummarizedExperiment-method |
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| updateObject,Assays-method |
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| updateObject,RangedSummarizedExperiment-method |
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| updateObject,SummarizedExperiment-method |
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| width,RangedSummarizedExperiment-method |
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| width<-,RangedSummarizedExperiment-method |
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