TENxIO: TENxIO: A Bioconductor package for importing 10X Genomics...

In LiNk-NY/TENxIO: Import methods for 10X Genomics files

TENxIO: A Bioconductor package for importing 10X Genomics files

Description

The package provides file classes based on BiocIO for common file extensions found in the 10X Genomics website.

Supported file types

Here is a table of supported file and file extensions and their imported classes:

Extension	Class	Imported as
.h5	TENxH5	SingleCellExperiment w/ TENxMatrix
.mtx / .mtx.gz	TENxMTX	SummarizedExperiment w/ dgCMatrix
.tar.gz	TENxFileList	SingleCellExperiment w/ dgCMatrix
peak_annotation.tsv	TENxPeaks	GRanges
fragments.tsv.gz	TENxFragments	RaggedExperiment
.tsv / .tsv.gz	TENxTSV	tibble

Author(s)

Maintainer: Marcel Ramos [e-mail] (ORCID)

See Also

Useful links:

• https://github.com/waldronlab/TENxIO

• Report bugs at https://github.com/waldronlab/TENxIO/issues

LiNk-NY/TENxIO documentation built on Nov. 16, 2024, 7:10 p.m.