In LiNk-NY/shinyhubs: View AnnotationHub and ExperimentHub Resources Interactively

BiocHubsShiny

The BiocHubsShiny package allows users to visually explore the AnnotationHub and ExperimentHub resources via shiny. It provides a tabular display of the available resources with the ability to filter and search through the column fields.

Installation

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHubsShiny")

Loading the package

library(BiocHubsShiny)

Display of resources

Resources are displayed interactively using the eponymous function:

BiocHubsShiny()

knitr::include_graphics("figures/BiocHubsShiny.png")

Filtering

You can filter by any of the columns in the table. For example, you can search for 'Mus musculus' to get resources only for that species:

knitr::include_graphics("figures/MusMusculus.png")

Selection

Click on the rows to select the resources. They will show up as highlighted rows.

knitr::include_graphics("figures/MusMusculusSelection.png")

Import

Once the selection is highlighted, the code at the bottom of the app will be updated to show the commands for entering (reproducibly) into the R session.

knitr::include_graphics("figures/MusMusculusCode.png")

Session Info

sessionInfo()

LiNk-NY/shinyhubs documentation built on May 1, 2024, 8:37 p.m.