NEWS.md
In LieberInstitute/DeconvoBuddies: Helper Functions for LIBD Deconvolution
DeconvoBuddies 0.99.0
NEW FEATURES
- Initial version of
DeconvoBuddies that introduces the Mean Ratio
method for identifying cluster marker genes as implemented in
get_mean_ratio(). This method is described in more detail at
https://doi.org/10.1101/2024.02.09.579665. This package also provides a
wrapper to scran::findMarkers() for identifying marker genes expressed in
one cluster compared to all remaining ones. See findMarkeres_1vAll() for more
details. Additionally, DeconvoBuddies provides plotting functions for
visualizing gene expression as violin plots across different clusters. These
plots are much smaller in size compared to other ones you can make with
scater::plotExpression(). See plot_gene_express(), plot_marker_express(),
and related functions.
LieberInstitute/DeconvoBuddies documentation built on Aug. 25, 2024, 11:12 a.m.
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DeconvoBuddies 0.99.0
NEW FEATURES
- Initial version of
DeconvoBuddiesthat introduces the Mean Ratio method for identifying cluster marker genes as implemented inget_mean_ratio(). This method is described in more detail at https://doi.org/10.1101/2024.02.09.579665. This package also provides a wrapper toscran::findMarkers()for identifying marker genes expressed in one cluster compared to all remaining ones. SeefindMarkeres_1vAll()for more details. Additionally,DeconvoBuddiesprovides plotting functions for visualizing gene expression as violin plots across different clusters. These plots are much smaller in size compared to other ones you can make withscater::plotExpression(). Seeplot_gene_express(),plot_marker_express(), and related functions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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