sce_zero_test: Test SummarizedExperiment data
In LieberInstitute/TREG: Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
sce_zero_test R Documentation
Test SummarizedExperiment data
Description
A simulated SummarizedExperiment-class
object representing the expression of 100 cells across 5 genes.
This object is used as an example dataset throughout TREG.
Usage
sce_zero_test
Format
A SummarizedExperiment-class
object with 5 rows and 100 columns.
Details
The colData of the object contains demo sample information about the cell,
that were designed to be used as group_col, (such as cell_type, donor, and region).
The expression of the 5 genes were designed to show a range of
Proportion Zeros across groups for different genes.
The overall prop_zero for these theoretical genes are:
g100: prop_zero = 1.00
g50: prop_zero = 0.50
g0: prop_zero = 0.00
gOffOn: prop_zero = 0.50
gVar: prop_zero = 0.54
LieberInstitute/TREG documentation built on Dec. 15, 2024, 12:24 p.m.
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| sce_zero_test | R Documentation |
Test SummarizedExperiment data
Description
A simulated SummarizedExperiment-class
object representing the expression of 100 cells across 5 genes.
This object is used as an example dataset throughout TREG.
Usage
sce_zero_test
Format
A SummarizedExperiment-class object with 5 rows and 100 columns.
Details
The colData of the object contains demo sample information about the cell,
that were designed to be used as group_col, (such as cell_type, donor, and region).
The expression of the 5 genes were designed to show a range of
Proportion Zeros across groups for different genes.
The overall prop_zero for these theoretical genes are:
g100:
prop_zero = 1.00g50:
prop_zero = 0.50g0:
prop_zero = 0.00gOffOn:
prop_zero = 0.50gVar:
prop_zero = 0.54
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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