filter_called: Filter the Called snp array

Description Usage Arguments Value Examples

View source: R/filter_called.R

Description

Filter the Called snp array

Usage

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filter_called(
  called,
  DP_min = 5,
  DP_max = 80,
  ref_call = 1,
  alt_call = 1,
  overlaps = 1,
  min_VDB = 0.1
)

Arguments

called

CollapsedVCF containing filtered snp info for rna data

DP_min

TODO

DP_max

TODO

ref_call

TODO

alt_call

TODO

overlaps

TODO

min_VDB

TODO

Value

Filtered snp array

Examples

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dim(snpsCalled_VCF)
snpsCalled_filter <- filter_called(snpsCalled_VCF)
dim(snpsCalled_filter)

LieberInstitute/brainstorm_package documentation built on Dec. 17, 2021, 12:04 a.m.