NEWS.md

In LieberInstitute/sgejobs: Helper functions for SGE jobs at JHPCE

sgejobs 0.99.2

SIGNIFICANT USER-VISIBLE CHANGES

• Removed is_travis() since now all code is tested at GitHub Actions.

sgejobs 0.99.1

• Add the accounting_files parameter to the accounting() family of functions now that archive files have been created at JHPCE for this type of SGE job information.

sgejobs 0.99.0

• Added a NEWS.md file to track changes to the package.
• Added the functions parse_task_ids() and parse_task_ids_builder() for parsing SGE task IDs.
• Added the function array_submit() for submitting an SGE array job for a given set of input task IDs.
• Added the function job_single() for creating a shell file for a new job that can be submitted using qsub.
• Added the function job_loop() for creating a function that loops through a bash variable(s) to create shell scripts that are then submitted to SGE using qsub.
• Added the functions log_date() and log_jobid() to find the start/end date from an SGE log file as well as the job id.
• Added the function array_submit_num() for submitting an array job given a maximum task number. This function deals with the array task maximum imposed by JHPCE of 75000 tasks per array job.
• Added the function accounting() with helper functions accounting_read() and accounting_parse() which read and parse the qacct information from SGE on a set of SGE job IDs and ultimately return a data.frame with the job summary information.

LieberInstitute/sgejobs documentation built on May 12, 2023, 5:20 p.m.