knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "man/figures/README-", out.width = "100%" )
This package contains helper functions for Son of Grid Engine (SGE) cluster jobs, mostly with usage at the Joint High Performance Computing Exchange (JHPCE) cluster in mind. Please check the package documentation website for more information about how to use sgejobs
.
Get the latest stable R
release from CRAN. Then install sgejobs
from GitHub with:
BiocManager::install("LieberInstitute/sgejobs")
Below is the citation output from using citation('sgejobs')
in R. Please
run this yourself to check for any updates on how to cite sgejobs.
print(citation("sgejobs"), bibtex = TRUE)
Please note that the sgejobs
was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.
Please note that the sgejobs
project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
r BiocStyle::CRANpkg('usethis')
, r BiocStyle::CRANpkg('remotes')
, and r BiocStyle::CRANpkg('rcmdcheck')
customized to use Bioconductor's docker containers and r BiocStyle::Biocpkg('BiocCheck')
.r BiocStyle::CRANpkg('covr')
.r BiocStyle::CRANpkg('pkgdown')
.r BiocStyle::CRANpkg('styler')
.r BiocStyle::CRANpkg('devtools')
and r BiocStyle::CRANpkg('roxygen2')
.For more details, check the dev
directory.
This package was developed using r BiocStyle::Biocpkg('biocthis')
.
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