Files in LihuaJulieZhu/NADfinder
Call wide peaks for sequencing data
DESCRIPTION
NAMESPACE
NEWS.md
R/NADfinder.R
R/backgroundCorrection.R
R/butterFilter.R
R/callPeaks.R
R/cumulativePercentage.R
R/exportSignals.R
R/getCorrelations.R
R/groupZscores.R
R/log2se.R
R/peakdet.R
R/plotSig.R
R/single.count.R
R/smoothRatiosByChromosome.R
R/tileCount.R
R/tileCount2.R
R/transformData.R
R/trimPeaks.R
R/triplicates.counts.R
R/zscoreOverBck.R
README.md
data/datalist
data/single.count.rda
data/triplicate.count.rda
inst/extdata/G18.subsampled.srt.bam
inst/extdata/G18.subsampled.srt.bam.bai
inst/extdata/N18.subsampled.srt.bam
inst/extdata/N18.subsampled.srt.bam.bai
inst/extdata/ideo.mm10.rds
man/IntersectionNotStrict.Rd
man/NADfinder-package.Rd
man/backgroundCorrection.Rd
man/butterFilter.Rd
man/callPeaks.Rd
man/cumulativePercentage.Rd
man/exportSignals.Rd
man/getCorrelations.Rd
man/groupZscores.Rd
man/log2se.Rd
man/peakdet.Rd
man/plotSig.Rd
man/single.count.Rd
man/smoothRatiosByChromosome.Rd
man/tileCount.Rd
man/tileCount2.Rd
man/transformData.Rd
man/trimPeaks.Rd
man/triplicate.count.Rd
man/zscoreOverBck.Rd
tests/runTests.R
tests/testthat/test_log2ratio.R
tests/testthat/test_smoothRatiosByChromosome.R
tests/testthat/test_tileCount.R
tests/testthat/test_zscoreOverBck.R
vignettes/NADfinder.Rmd
vignettes/Picture1.png
vignettes/bibliography.bib
vignettes/nature.csl
