getTraits: Get TreeCo Species Traits
In LimaRAF/TreeCo: An R Package to Manage TreeCo Database

getTraits

R Documentation

Get TreeCo Species Traits

Description

To be included

Usage

getTraits(
  tree.data = NULL,
  spp.name = "Name_submitted",
  trait.cons = NULL,
  trait.sp = NULL,
  trait.gen = NULL,
  trait.fam = NULL,
  generaliza = list(c("wsg_gcm3", "LeafType", "SeedMass_g"), c("wsg_gcm3")),
  add.spp = NULL,
  rm.colunas = NULL,
  inc.colunas = NULL
)

Arguments

`tree.data`	a data frame with the species names
`spp.name`	character. The name of the column containing the species names. Defaults to "Name_submitted"
`trait.cons`	a data frame with the extra, consensual species information
`trait.sp`	data frame with the species trait information averaged by species
`trait.gen`	data frame with the species trait information averaged by genus
`trait.fam`	data frame with the species trait information averaged by family
`generaliza`	a list containing the vectors of traits which can be generalized at genera and family levels, respectively. Defaults to list(c("wsg_gcm3","LeafType","SeedMass_g"),c("wsg_gcm3"))
`add.spp`	data frame with species to be added to the trait retrieval
`rm.colunas`	vector of extra columns names that will be removed from the original dataframe. Default is NULL but a vector is provided with the most commonly removed columns
`inc.colunas`	vector of columns names that should be included contained in the vector of often-excluded columns. Default is NULL (i.e. keep the vector of often-excluded columns the same)