Man pages for Liulab/PD1highCD8Tscore
Quantify PD-1hiCD8+ T cells in tumor environment
| background | background gene sets for getSigScore |
| Cho | expression matrix and clinical information from Cho et al |
| CRMA | Anti-CTLA4 resistance MAGE genes (CRMA) |
| getIPS | Calculation of Immunophenoscore |
| getSigScore | Calculate PD-1hi CD8+ T cell signature score |
| Gide | expression matrix and clinical information from Gide et al |
| house | house keeping genes |
| ICIResponse | Markers and response/survival to ICI therapy |
| INFG | IFN gamma as a response biomarker by Ayers et al. |
| IPSG | gene set in Immunophenoscore |
| Jung | expression matrix and clinical information from Jung et al |
| Kim | expression matrix and clinical information from Kim et al |
| PD1hiCD8T_Sig | Gene sets to calculate PD-1hi CD8+ T cell signature score |
| PD1highCD8Tscore-package | PD1highCD8Tscore |
| Riaz | expression matrix and clinical information from Riaz et al |
| TLS | gene sets for Tertiary lymphoid structures |
