Man pages for LorenzoCattarino/priorityeffort
Prioritization of conservation management effort.
| bar_plot_change_from_target | Create and save a bar plot of percentage change in feature... |
| bar_plot_representation_error | Create and save a bar plot of feature representation error. |
| bar_plot_species_proportions | Create and save a bar plot of the proportion of species above... |
| calc_daly_prop_selected | Calculate the proportion of the study region which has been... |
| calculate_representation_error | Calculate a set of diagnostics for a specific assumption... |
| calc_uncertainty_diagnostics | Average uncertainty diagnostics across species. |
| cal_norm_lower_bound | Normalize experts' lower bounds. |
| cal_norm_upper_bound | Normalize experts' upper bounds. |
| components_OF | Calculate the value of the objective function. |
| count.persistence | Calculate the benefit of selected effort for each species. |
| create_exp_des | Create a set of parameter combinations to run the... |
| df_to_list | Convert data frame to list. |
| get.action.costs | Create action cost list. |
| get_cost_breakdown | Create table 2 for paper. |
| get.required_actions | Create required action list |
| get_run_diagnostics | Get diagnostics from a prioritization solution. |
| get_selected_pu_index | Get indices of selected planning units. |
| get.site.action.intensities.combs | Create site action intensity combination array. |
| get.threat.intensity.category | Create threat intensity category array. |
| hello | Hello, World! |
| loop | Loop using parLapply. |
| loop_simplify | wrapper over loop function. |
| moving_index_search | Get indices of best runs |
| one_run | Reshape the data in the desired form and feed them to the... |
| Optimize | Performs the prioritization using simulated annealing. |
| plot_change_from_target | Create and save a scatter plot of percentage change in... |
| plot_effort_map | Create and save a map of selected effort for each action. |
| plot_representation_error | Create and save a scatter plot of feature representation... |
| plot_species_proportions | Create and save a scatter plot of the proportion of species... |
| plot_trackers | Plot temperature, cost and feature penalty during the... |
| set_fixed_targets | Set fixed feature targets. |
| set_scaled_targets | Set area-scaled targets. |
| wrapper | Wrapper for vectorizing 'one_run()'. |
| wrapper_to_get_responses | Wrapper for vectorizing 'get.responses.to.actions()'. |
| write_out_csv | Save a csv file. |
| write_out_txt | Save a text file. |
