getJasparMotifs: getJasparMotifs
In LouisKwok-PICB/motifscanr: Tools for Scanning TF motif on DNA regions
getJasparMotifs R Documentation
getJasparMotifs
Description
function to get motifs from JASPAR database
Usage
getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)
Arguments
species
Which species? use either jaspar code or latin name.
default is 'Homo sapiens'
collection
Which collection to use? default is 'CORE'
...
additional arguments to opts for
getMatrixSet
Details
Simply a wrapper function for getMatrixSet
that calls JASPAR2020 database using JASPAR2020
Value
PFMatrixList
Examples
motifs <- getJasparMotifs()
LouisKwok-PICB/motifscanr documentation built on July 22, 2024, 6:36 a.m.
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| getJasparMotifs | R Documentation |
getJasparMotifs
Description
function to get motifs from JASPAR database
Usage
getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)
Arguments
species |
Which species? use either jaspar code or latin name. default is 'Homo sapiens' |
collection |
Which collection to use? default is 'CORE' |
... |
additional arguments to opts for
|
Details
Simply a wrapper function for getMatrixSet
that calls JASPAR2020 database using JASPAR2020
Value
PFMatrixList
Examples
motifs <- getJasparMotifs()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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