discretize: Discretize function

In LrRmpf/fastged: A Gene Expression Discretization Implementation

Description

'discretize' takes an .txt input file containing a matrix of fpkm values and returns an output file with the discretized values (either classes 0,1 or -1,0,1)

Usage

discretize(file, figflag, binaryflag, output)

Arguments

file	(Path) input .txt file containing fpkm values (Columns=Samples, Rows=Genes)
figflag	Binary parameter for plotting (TRUE = plot output)
binaryflag	Binary parameter for binary discretization (TRUE = 0,1 classes)
output	(Path) name output file

Value

output file containing a discrete value for every fpkm value of the input file (0,1 values for binaryflag = TRUE, else -1,0,1)

LrRmpf/fastged documentation built on Feb. 24, 2022, 2:28 a.m.