Genotypes.parm: Obtain parameters from a fastPHASE genotype model
In LuZhangH/floodgate: Floodgate: inference for model-free variable importance

Description Usage Arguments Details Value References See Also

This function obtains the HMM parameters from a fastPHASE genotype model

1	Genotypes.parm(p)

`p`	number of nodes

The first p variables also follow a HMM.

A list containing pInit: a vector of K_st, which gives the marginal probabilities of the first variable; Q: an array of size (p-1, K_st, K_st), which gives the p-1 transition matrices of the hidden Markov chain; pEmit: an array of size (p, M, K_st), which is the emission probability matrix.

\insertRef

sesia2019floodgate

Other models: HMM.parm(), gen.Y()

LuZhangH/floodgate documentation built on Aug. 30, 2020, 2:10 a.m.