Description Usage Arguments Value
View source: R/create_net2plot.R
This function create an igraph network object for visualization puroposes
1 2 3 4 5 6 7 8 9 | create_net2plot(
g_net,
input_m,
gf_prop,
ann_net_b,
frag_pattern = "F",
ff_net = NULL,
ff_prop = NULL
)
|
g_net |
matrix, in each row there are starting and ending nodes of one edge in the matrix. This matrix represent a gene-gene or gene-fragment network. |
input_m |
vector of dimension nX1 representing the transcriptional profile befor propagation |
gf_prop |
vector of dimension nX1 representing the transcriptional profile after propagation using a gene-gene or gene-fragment network |
ann_net_b |
matrix, for each row presents the gene identifier, the chromosome in which the gene is, the starting end ending position in the sequence. |
frag_pattern |
string, initial character of the fragments name |
ff_net |
g_net matrix, in each row there are starting and ending nodes of one edge in the matrix. This matrix represent a fragment-fragment network. |
ff_prop |
vector of dimension nX1 representing the transcriptional profile after propagation using a gene-fragment network |
igraph object
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