create_net2plot: This function create an igraph network object for...

Description Usage Arguments Value

View source: R/create_net2plot.R

Description

This function create an igraph network object for visualization puroposes

Usage

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create_net2plot(
  g_net,
  input_m,
  gf_prop,
  ann_net_b,
  frag_pattern = "F",
  ff_net = NULL,
  ff_prop = NULL
)

Arguments

g_net

matrix, in each row there are starting and ending nodes of one edge in the matrix. This matrix represent a gene-gene or gene-fragment network.

input_m

vector of dimension nX1 representing the transcriptional profile befor propagation

gf_prop

vector of dimension nX1 representing the transcriptional profile after propagation using a gene-gene or gene-fragment network

ann_net_b

matrix, for each row presents the gene identifier, the chromosome in which the gene is, the starting end ending position in the sequence.

frag_pattern

string, initial character of the fragments name

ff_net

g_net matrix, in each row there are starting and ending nodes of one edge in the matrix. This matrix represent a fragment-fragment network.

ff_prop

vector of dimension nX1 representing the transcriptional profile after propagation using a gene-fragment network

Value

igraph object


LucaGiudice/propaGUIation documentation built on Dec. 17, 2021, 1:13 a.m.