Files in LukasBurger/MethylSeekR
Segmentation of Bis-seq data
.Rbuildignore
.github/workflows/build_and_check.yml
.gitignore
DESCRIPTION
MethylSeekR.Rproj
NAMESPACE
R/PMDviterbiSegmentation.R
R/calculateAlphaDistr.R
R/calculateFDRs.R
R/createGRangesObjectPMDSegmentation.R
R/plotAlphaDistributionOneChr.R
R/plotFinalSegmentation.R
R/plotPMDSegmentation.R
R/readMethylome.R
R/readSNPTable.R
R/removeSNPs.R
R/savePMDSegments.R
R/saveUMRLMRSegments.R
R/segmentPMDs.R
R/segmentUMRsLMRs.R
R/trainPMDHMM.R
inst/CITATION
inst/extdata/Lister2009_imr90_hg18_chr22.tab
inst/extdata/SNVs_hg18_chr22.tab
man/MethylSeekR-package.Rd
man/calculateFDRs.Rd
man/plotAlphaDistributionOneChr.Rd
man/plotFinalSegmentation.Rd
man/plotPMDSegmentation.Rd
man/readMethylome.Rd
man/readSNPTable.Rd
man/removeSNPs.Rd
man/savePMDSegments.Rd
man/saveUMRLMRSegments.Rd
man/segmentPMDs.Rd
man/segmentUMRsLMRs.Rd
vignettes/MethylSeekR.Rnw
vignettes/refs.bib
