testdata2: testdata2
In LyonsZhang/ProgPermute: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries
Usage
1
data("testdata2")
Format
A data frame with 88 observations on the following 842 variables.
variablea numeric vector
Phylum.Actinobacteriaa numeric vector
Phylum.Bacteroidetesa numeric vector
Phylum.Firmicutesa numeric vector
Phylum.Fusobacteriaa numeric vector
Phylum.Lentisphaeraea numeric vector
Phylum.Proteobacteriaa numeric vector
Phylum.Synergistetesa numeric vector
Phylum.Tenericutesa numeric vector
Phylum.Verrucomicrobiaa numeric vector
Class.Actinobacteriaa numeric vector
Class.Alphaproteobacteriaa numeric vector
Class.Bacillia numeric vector
Class.Bacteroidiaa numeric vector
Class.Betaproteobacteriaa numeric vector
Class.Clostridiaa numeric vector
Class.Coriobacteriiaa numeric vector
Class.Deltaproteobacteriaa numeric vector
Class.Epsilonproteobacteriaa numeric vector
Class.Erysipelotrichiaa numeric vector
Class.Fusobacteriiaa numeric vector
Class.Gammaproteobacteriaa numeric vector
Class.Lentisphaeriaa numeric vector
Class.Mollicutesa numeric vector
Class.Negativicutesa numeric vector
Class.Opitutaea numeric vector
Class.Synergistiaa numeric vector
Class.Verrucomicrobiaea numeric vector
Order.Actinomycetalesa numeric vector
Order.Anaeroplasmatalesa numeric vector
Order.Bacillalesa numeric vector
Order.Bacteroidalesa numeric vector
Order.Bifidobacterialesa numeric vector
Order.Burkholderialesa numeric vector
Order.Campylobacteralesa numeric vector
Order.Clostridialesa numeric vector
Order.Coriobacterialesa numeric vector
Order.Corynebacterialesa numeric vector
Order.Desulfovibrionalesa numeric vector
Order.Enterobacterialesa numeric vector
Order.Erysipelotrichalesa numeric vector
Order.Fusobacterialesa numeric vector
Order.Lactobacillalesa numeric vector
Order.Micrococcalesa numeric vector
Order.Mollicutes_RF9a numeric vector
Order.NB1.na numeric vector
Order.Neisserialesa numeric vector
Order.Pasteurellalesa numeric vector
Order.Pseudomonadalesa numeric vector
Order.Puniceicoccalesa numeric vector
Order.Rhodospirillalesa numeric vector
Order.Rickettsialesa numeric vector
Order.Selenomonadalesa numeric vector
Order.Sphingomonadalesa numeric vector
Order.Synergistalesa numeric vector
Order.Thermoanaerobacteralesa numeric vector
Order.Verrucomicrobialesa numeric vector
Order.Victivallalesa numeric vector
Family.Acidaminococcaceaea numeric vector
Family.Actinomycetaceaea numeric vector
Family.Aerococcaceaea numeric vector
Family.Alcaligenaceaea numeric vector
Family.Anaeroplasmataceaea numeric vector
Family.Bacillaceaea numeric vector
Family.Bacteroidaceaea numeric vector
Family.Bacteroidales_S24.7_groupa numeric vector
Family.Bacteroidales_unclassa numeric vector
Family.Bifidobacteriaceaea numeric vector
Family.Caldicoprobacteraceaea numeric vector
Family.Campylobacteraceaea numeric vector
Family.Carnobacteriaceaea numeric vector
Family.Christensenellaceaea numeric vector
Family.Clostridiaceae_1a numeric vector
Family.Clostridiales_vadinBB60_groupa numeric vector
Family.Coriobacteriaceaea numeric vector
Family.Corynebacteriaceaea numeric vector
Family.Defluviitaleaceaea numeric vector
Family.Desulfovibrionaceaea numeric vector
Family.Enterobacteriaceaea numeric vector
Family.Enterococcaceaea numeric vector
Family.Erysipelotrichaceaea numeric vector
Family.Eubacteriaceaea numeric vector
Family.Family_XIa numeric vector
Family.Family_XIIIa numeric vector
Family.Fusobacteriaceaea numeric vector
Family.Lachnospiraceaea numeric vector
Family.Lactobacillaceaea numeric vector
Family.Leptotrichiaceaea numeric vector
Family.Leuconostocaceaea numeric vector
Family.Micrococcaceaea numeric vector
Family.Mitochondriaa numeric vector
Family.Mollicutes_RF9_faa numeric vector
Family.NB1.n_faa numeric vector
Family.Neisseriaceaea numeric vector
Family.Pasteurellaceaea numeric vector
Family.Peptococcaceaea numeric vector
Family.Peptostreptococcaceaea numeric vector
Family.Porphyromonadaceaea numeric vector
Family.Prevotellaceaea numeric vector
Family.Pseudomonadaceaea numeric vector
Family.Puniceicoccaceaea numeric vector
Family.Rhodospirillaceaea numeric vector
Family.Rikenellaceaea numeric vector
Family.Ruminococcaceaea numeric vector
Family.Sphingomonadaceaea numeric vector
Family.Staphylococcaceaea numeric vector
Family.Streptococcaceaea numeric vector
Family.Synergistaceaea numeric vector
Family.Thermoanaerobacteraceaea numeric vector
Family.vadinBE97a numeric vector
Family.Veillonellaceaea numeric vector
Family.Verrucomicrobiaceaea numeric vector
Family.Victivallaceaea numeric vector
Genus.Abiotrophiaa numeric vector
Genus.Acetanaerobacteriuma numeric vector
Genus.Acidaminococcusa numeric vector
Genus.Actinomycesa numeric vector
Genus.Actinotignuma numeric vector
Genus.Adlercreutziaa numeric vector
Genus.Akkermansiaa numeric vector
Genus.Alistipesa numeric vector
Genus.Allisonellaa numeric vector
Genus.Alloprevotellaa numeric vector
Genus.Alloscardoviaa numeric vector
Genus.Anaerococcusa numeric vector
Genus.Anaerofiluma numeric vector
Genus.Anaerofustisa numeric vector
Genus.Anaeroglobusa numeric vector
Genus.Anaeroplasmaa numeric vector
Genus.Anaerosinusa numeric vector
Genus.Anaerosporobactera numeric vector
Genus.Anaerostipesa numeric vector
Genus.Anaerotruncusa numeric vector
Genus.Anaerovibrioa numeric vector
Genus.Atopobiuma numeric vector
Genus.Bacillusa numeric vector
Genus.Bacteroidales_S24.7_group_gea numeric vector
Genus.Bacteroidesa numeric vector
Genus.Barnesiellaa numeric vector
Genus.Bifidobacteriuma numeric vector
Genus.Bilophilaa numeric vector
Genus.Blautiaa numeric vector
Genus.Butyricicoccusa numeric vector
Genus.Butyricimonasa numeric vector
Genus.Caldicoprobactera numeric vector
Genus.Campylobactera numeric vector
Genus.Candidatus_Soleaferreaa numeric vector
Genus.Candidatus_Stoquefichusa numeric vector
Genus.Caproiciproducensa numeric vector
Genus.Catabactera numeric vector
Genus.Catenibacteriuma numeric vector
Genus.Catenisphaeraa numeric vector
Genus.Cellulosilyticuma numeric vector
Genus.Cerasicoccusa numeric vector
Genus.Cetobacteriuma numeric vector
Genus.Christensenellaa numeric vector
Genus.Christensenellaceae_R.7_groupa numeric vector
Genus.Christensenellaceae_unclassa numeric vector
Genus.Citrobactera numeric vector
Genus.Cloacibacillusa numeric vector
Genus.Clostridiales_vadinBB60_group_gea numeric vector
Genus.Clostridium_sensu_stricto_1a numeric vector
Genus.Clostridium_sensu_stricto_13a numeric vector
Genus.Clostridium_sensu_stricto_2a numeric vector
Genus.Collinsellaa numeric vector
Genus.Coprobacillusa numeric vector
Genus.Coprobactera numeric vector
Genus.Coprococcus_1a numeric vector
Genus.Coprococcus_2a numeric vector
Genus.Coprococcus_3a numeric vector
Genus.Coriobacteriaceae_unclassa numeric vector
Genus.Corynebacteriuma numeric vector
Genus.Cosenzaeaa numeric vector
Genus.Cryptobacteriuma numeric vector
Genus.Defluviitaleaceae_UCG.011a numeric vector
Genus.Desulfovibrioa numeric vector
Genus.Dialistera numeric vector
Genus.Dielmaa numeric vector
Genus.Doreaa numeric vector
Genus.Dysgonomonasa numeric vector
Genus.Eggerthellaa numeric vector
Genus.Eisenbergiellaa numeric vector
Genus.Enterobactera numeric vector
Genus.Enterococcusa numeric vector
Genus.Enterorhabdusa numeric vector
Genus.Epulopisciuma numeric vector
Genus.Erysipelatoclostridiuma numeric vector
Genus.Erysipelotrichaceae_gea numeric vector
Genus.Erysipelotrichaceae_UCG.003a numeric vector
Genus.Erysipelotrichaceae_UCG.004a numeric vector
Genus.Erysipelotrichaceae_unclassa numeric vector
Genus.Escherichia.Shigellaa numeric vector
Genus.Eubacteriuma numeric vector
Genus.Ezakiellaa numeric vector
Genus.Faecalibacteriuma numeric vector
Genus.Faecalibaculuma numeric vector
Genus.Faecalicoccusa numeric vector
Genus.Faecalitaleaa numeric vector
Genus.Family_XIII_AD3011_groupa numeric vector
Genus.Family_XIII_gea numeric vector
Genus.Family_XIII_UCG.001a numeric vector
Genus.Family_XIII_unclassa numeric vector
Genus.Finegoldiaa numeric vector
Genus.Flavonifractora numeric vector
Genus.Fusicatenibactera numeric vector
Genus.Fusobacteriuma numeric vector
Genus.Gelriaa numeric vector
Genus.Gemellaa numeric vector
Genus.Gordonibactera numeric vector
Genus.Granulicatellaa numeric vector
Genus.Haemophilusa numeric vector
Genus.Hafnia.Obesumbacteriuma numeric vector
Genus.Holdemanellaa numeric vector
Genus.Holdemaniaa numeric vector
Genus.Howardellaa numeric vector
Genus.Hungatellaa numeric vector
Genus.Hydrogenoanaerobacteriuma numeric vector
Genus.Intestinibactera numeric vector
Genus.Intestinimonasa numeric vector
Genus.Jonquetellaa numeric vector
Genus.Lachnoanaerobaculuma numeric vector
Genus.Lachnoclostridiuma numeric vector
Genus.Lachnoclostridium_10a numeric vector
Genus.Lachnospiraa numeric vector
Genus.Lachnospiraceae_FCS020_groupa numeric vector
Genus.Lachnospiraceae_gea numeric vector
Genus.Lachnospiraceae_ND3007_groupa numeric vector
Genus.Lachnospiraceae_NK4A136_groupa numeric vector
Genus.Lachnospiraceae_NK4B4_groupa numeric vector
Genus.Lachnospiraceae_UCG.001a numeric vector
Genus.Lachnospiraceae_UCG.003a numeric vector
Genus.Lachnospiraceae_UCG.004a numeric vector
Genus.Lachnospiraceae_UCG.008a numeric vector
Genus.Lachnospiraceae_UCG.010a numeric vector
Genus.Lachnospiraceae_unclassa numeric vector
Genus.Lachnospiraceae_XPB1014_groupa numeric vector
Genus.Lactobacillusa numeric vector
Genus.Lactococcusa numeric vector
Genus.Lactonifactora numeric vector
Genus.Lentimonasa numeric vector
Genus.Leptotrichiaa numeric vector
Genus.Leuconostoca numeric vector
Genus.Macellibacteroidesa numeric vector
Genus.Marvinbryantiaa numeric vector
Genus.Megamonasa numeric vector
Genus.Megasphaeraa numeric vector
Genus.Mitochondria_gea numeric vector
Genus.Mogibacteriuma numeric vector
Genus.Mollicutes_RF9_gea numeric vector
Genus.Morganellaa numeric vector
Genus.Moryellaa numeric vector
Genus.Murdochiellaa numeric vector
Genus.NB1.n_gea numeric vector
Genus.Negativicoccusa numeric vector
Genus.Neisseriaa numeric vector
Genus.Odoribactera numeric vector
Genus.Olsenellaa numeric vector
Genus.Oribacteriuma numeric vector
Genus.Oscillibactera numeric vector
Genus.Oscillospiraa numeric vector
Genus.Paeniclostridiuma numeric vector
Genus.Parabacteroidesa numeric vector
Genus.Paraprevotellaa numeric vector
Genus.Parascardoviaa numeric vector
Genus.Parasutterellaa numeric vector
Genus.Parvimonasa numeric vector
Genus.Pediococcusa numeric vector
Genus.Peptoclostridiuma numeric vector
Genus.Peptococcaceae_unclassa numeric vector
Genus.Peptococcusa numeric vector
Genus.Peptoniphilusa numeric vector
Genus.Peptostreptococcusa numeric vector
Genus.Phascolarctobacteriuma numeric vector
Genus.Porphyromonadaceae_unclassa numeric vector
Genus.Porphyromonasa numeric vector
Genus.Prevotellaa numeric vector
Genus.Prevotella_2a numeric vector
Genus.Prevotella_6a numeric vector
Genus.Prevotella_7a numeric vector
Genus.Prevotella_9a numeric vector
Genus.Prevotellaceae_NK3B31_groupa numeric vector
Genus.Prevotellaceae_UCG.001a numeric vector
Genus.Prevotellaceae_unclassa numeric vector
Genus.Proteusa numeric vector
Genus.Providenciaa numeric vector
Genus.Pseudobutyrivibrioa numeric vector
Genus.Pseudoflavonifractora numeric vector
Genus.Pseudomonasa numeric vector
Genus.Pseudoramibactera numeric vector
Genus.Pyramidobactera numeric vector
Genus.Raoultellaa numeric vector
Genus.Rhodospirillaceae_unclassa numeric vector
Genus.Rikenellaa numeric vector
Genus.Rikenellaceae_RC9_gut_groupa numeric vector
Genus.Robinsoniellaa numeric vector
Genus.Romboutsiaa numeric vector
Genus.Roseburiaa numeric vector
Genus.Rothiaa numeric vector
Genus.Ruminiclostridiuma numeric vector
Genus.Ruminiclostridium_1a numeric vector
Genus.Ruminiclostridium_5a numeric vector
Genus.Ruminiclostridium_6a numeric vector
Genus.Ruminiclostridium_9a numeric vector
Genus.Ruminococcaceae_gea numeric vector
Genus.Ruminococcaceae_NK4A214_groupa numeric vector
Genus.Ruminococcaceae_UCG.002a numeric vector
Genus.Ruminococcaceae_UCG.003a numeric vector
Genus.Ruminococcaceae_UCG.004a numeric vector
Genus.Ruminococcaceae_UCG.005a numeric vector
Genus.Ruminococcaceae_UCG.008a numeric vector
Genus.Ruminococcaceae_UCG.009a numeric vector
Genus.Ruminococcaceae_UCG.010a numeric vector
Genus.Ruminococcaceae_UCG.011a numeric vector
Genus.Ruminococcaceae_UCG.013a numeric vector
Genus.Ruminococcaceae_UCG.014a numeric vector
Genus.Ruminococcaceae_unclassa numeric vector
Genus.Ruminococcaceae_V9D2013_groupa numeric vector
Genus.Ruminococcus_1a numeric vector
Genus.Ruminococcus_2a numeric vector
Genus.Sarcinaa numeric vector
Genus.Scardoviaa numeric vector
Genus.Selenomonas_3a numeric vector
Genus.Sellimonasa numeric vector
Genus.Senegalimassiliaa numeric vector
Genus.Serratiaa numeric vector
Genus.Shuttleworthiaa numeric vector
Genus.Slackiaa numeric vector
Genus.Solobacteriuma numeric vector
Genus.Sphingomonasa numeric vector
Genus.Staphylococcusa numeric vector
Genus.Stomatobaculuma numeric vector
Genus.Streptococcusa numeric vector
Genus.Subdoligranuluma numeric vector
Genus.Succiniclasticuma numeric vector
Genus.Sutterellaa numeric vector
Genus.Synergistesa numeric vector
Genus.Syntrophococcusa numeric vector
Genus.Terrisporobactera numeric vector
Genus.Turicibactera numeric vector
Genus.Tyzzerellaa numeric vector
Genus.Tyzzerella_3a numeric vector
Genus.Tyzzerella_4a numeric vector
Genus.uncultured_gea numeric vector
Genus.vadinBE97_gea numeric vector
Genus.Varibaculuma numeric vector
Genus.Veillonellaa numeric vector
Genus.Veillonellaceae_gea numeric vector
Genus.Veillonellaceae_unclassa numeric vector
Genus.Victivallisa numeric vector
Genus.Weissellaa numeric vector
Species.Bacteroides_coagulansa numeric vector
Species.Bacteroides_pectinophilusa numeric vector
Species.Clostridium_aldenensea numeric vector
Species.Clostridium_aminovalericuma numeric vector
Species.Clostridium_bolteaea numeric vector
Species.Clostridium_clostridioformea numeric vector
Species.Clostridium_cocleatuma numeric vector
Species.Clostridium_glycyrrhizinilyticuma numeric vector
Species.Clostridium_hathewayia numeric vector
Species.Clostridium_hiranonisa numeric vector
Species.Clostridium_hylemonaea numeric vector
Species.Clostridium_innocuuma numeric vector
Species.Clostridium_lactatifermentansa numeric vector
Species.Clostridium_lavalensea numeric vector
Species.Clostridium_leptuma numeric vector
Species.Clostridium_methylpentosuma numeric vector
Species.Clostridium_oroticuma numeric vector
Species.Clostridium_saccharogumiaa numeric vector
Species.Clostridium_scindensa numeric vector
Species.Clostridium_sordelliia numeric vector
Species.Clostridium_spiroformea numeric vector
Species.Clostridium_symbiosuma numeric vector
Species.Eubacterium_biformea numeric vector
Species.Eubacterium_contortuma numeric vector
Species.Eubacterium_cylindroidesa numeric vector
Species.Eubacterium_dolichuma numeric vector
Species.Eubacterium_eligensa numeric vector
Species.Eubacterium_fissicatenaa numeric vector
Species.Eubacterium_halliia numeric vector
Species.Eubacterium_siraeuma numeric vector
Species.Eubacterium_sulcia numeric vector
Species.Ruminococcus_gnavusa numeric vector
Species.Ruminococcus_obeuma numeric vector
Species.Ruminococcus_torquesa numeric vector
Species.Streptococcus_pleomorphusa numeric vector
Species.Abiotrophia_defectivaa numeric vector
Species.Acetanaerobacterium_unclassa numeric vector
Species.Acidaminococcus_intestinia numeric vector
Species.Actinomyces_europaeusa numeric vector
Species.Actinomyces_gerencseriaea numeric vector
Species.Actinomyces_graevenitziia numeric vector
Species.Actinomyces_ihumiia numeric vector
Species.Actinomyces_israeliia numeric vector
Species.Actinomyces_johnsoniia numeric vector
Species.Actinomyces_odontolyticusa numeric vector
Species.Actinomyces_unclassa numeric vector
Species.Actinomyces_viscosusa numeric vector
Species.Actinotignum_unclassa numeric vector
Species.Acutalibacter_murisa numeric vector
Species.Adlercreutzia_equolifaciensa numeric vector
Species.Akkermansia_muciniphilaa numeric vector
Species.Alistipes_finegoldiia numeric vector
Species.Alistipes_ihumiia numeric vector
Species.Alistipes_indistinctusa numeric vector
Species.Alistipes_obesia numeric vector
Species.Alistipes_onderdonkiia numeric vector
Species.Alistipes_putredinisa numeric vector
Species.Alistipes_senegalensisa numeric vector
Species.Alistipes_shahiia numeric vector
Species.Alistipes_unclassa numeric vector
Species.Allisonella_histaminiformansa numeric vector
Species.Alloprevotella_unclassa numeric vector
Species.Alloscardovia_omnicolensa numeric vector
Species.Anaerococcus_obesiensisa numeric vector
Species.Anaerococcus_vaginalisa numeric vector
Species.Anaerofilum_pentosovoransa numeric vector
Species.Anaerofilum_unclassa numeric vector
Species.Anaerofustis_stercorihominisa numeric vector
Species.Anaeroglobus_geminatusa numeric vector
Species.Anaeromassilibacillus_senegalensisa numeric vector
Species.Anaeroplasma_unclassa numeric vector
Species.Anaerosinus_glycerinia numeric vector
Species.Anaerosporobacter_mobilisa numeric vector
Species.Anaerostipes_caccaea numeric vector
Species.Anaerostipes_hadrusa numeric vector
Species.Anaerostipes_unclassa numeric vector
Species.Anaerotruncus_colihominisa numeric vector
Species.Anaerotruncus_unclassa numeric vector
Species.Anaerovibrio_unclassa numeric vector
Species.Atopobium_parvuluma numeric vector
Species.Bacillus_hisashiia numeric vector
Species.Bacteroidales_S24.7_group_ge_unclassa numeric vector
Species.Bacteroides_caccaea numeric vector
Species.Bacteroides_caecimurisa numeric vector
Species.Bacteroides_cellulosilyticusa numeric vector
Species.Bacteroides_coprocolaa numeric vector
Species.Bacteroides_doreia numeric vector
Species.Bacteroides_eggerthiia numeric vector
Species.Bacteroides_finegoldiia numeric vector
Species.Bacteroides_fragilisa numeric vector
Species.Bacteroides_intestinalisa numeric vector
Species.Bacteroides_massiliensisa numeric vector
Species.Bacteroides_nordiia numeric vector
Species.Bacteroides_oleiciplenusa numeric vector
Species.Bacteroides_ovatusa numeric vector
Species.Bacteroides_plebeiusa numeric vector
Species.Bacteroides_reticulotermitisa numeric vector
Species.Bacteroides_rodentiuma numeric vector
Species.Bacteroides_salyersiaea numeric vector
Species.Bacteroides_sartoriia numeric vector
Species.Bacteroides_stercorisa numeric vector
Species.Bacteroides_thetaiotaomicrona numeric vector
Species.Bacteroides_unclassa numeric vector
Species.Bacteroides_uniformisa numeric vector
Species.Bacteroides_vulgatusa numeric vector
Species.Bacteroides_xylanisolvensa numeric vector
Species.Barnesiella_intestinihominisa numeric vector
Species.Bifidobacterium_animalisa numeric vector
Species.Bifidobacterium_bifiduma numeric vector
Species.Bifidobacterium_brevea numeric vector
Species.Bifidobacterium_dentiuma numeric vector
Species.Bifidobacterium_kashiwanohensea numeric vector
Species.Bilophila_unclassa numeric vector
Species.Blautia_caecimurisa numeric vector
Species.Blautia_coccoidesa numeric vector
Species.Blautia_gluceraseaa numeric vector
Species.Blautia_hanseniia numeric vector
Species.Blautia_hydrogenotrophicaa numeric vector
Species.Blautia_lutia numeric vector
Species.Blautia_unclassa numeric vector
Species.Butyricicoccus_pullicaecoruma numeric vector
Species.Butyricicoccus_unclassa numeric vector
Species.Butyricimonas_faecihominisa numeric vector
Species.Butyricimonas_paravirosaa numeric vector
Species.Butyricimonas_synergisticaa numeric vector
Species.Butyricimonas_unclassa numeric vector
Species.Butyricimonas_virosaa numeric vector
Species.Caldicoprobacter_unclassa numeric vector
Species.Campylobacter_concisusa numeric vector
Species.Campylobacter_gracilisa numeric vector
Species.Campylobacter_unclassa numeric vector
Species.Candidatus_Soleaferrea_unclassa numeric vector
Species.Candidatus_Stoquefichus_unclassa numeric vector
Species.Caproiciproducens_unclassa numeric vector
Species.Catabacter_hongkongensisa numeric vector
Species.Catenibacterium_mitsuokaia numeric vector
Species.Catenisphaera_unclassa numeric vector
Species.Cellulosilyticum_unclassa numeric vector
Species.Cerasicoccus_arenaea numeric vector
Species.Cetobacterium_someraea numeric vector
Species.Christensenella_massiliensisa numeric vector
Species.Christensenella_minutaa numeric vector
Species.Christensenella_timonensisa numeric vector
Species.Christensenellaceae_R.7_group_unclassa numeric vector
Species.Christensenellaceae_unclassa numeric vector
Species.Citrobacter_farmeria numeric vector
Species.Citrobacter_freundiia numeric vector
Species.Cloacibacillus_evryensisa numeric vector
Species.Cloacibacillus_porcoruma numeric vector
Species.Clostridiales_vadinBB60_group_ge_unclassa numeric vector
Species.Clostridium_argentinensea numeric vector
Species.Clostridium_butyricuma numeric vector
Species.Clostridium_cadaverisa numeric vector
Species.Clostridium_dakarensea numeric vector
Species.Clostridium_disporicuma numeric vector
Species.Clostridium_jeddahensea numeric vector
Species.Clostridium_paraputrificuma numeric vector
Species.Clostridium_perfringensa numeric vector
Species.Clostridium_saccharobutylicuma numeric vector
Species.Clostridium_sartagoformea numeric vector
Species.Clostridium_saudiia numeric vector
Species.Clostridium_sensu_stricto_1_unclassa numeric vector
Species.Clostridium_subterminalea numeric vector
Species.Clostridium_tertiuma numeric vector
Species.Collinsella_aerofaciensa numeric vector
Species.Collinsella_intestinalisa numeric vector
Species.Collinsella_tanakaeia numeric vector
Species.Coprobacillus_cateniformisa numeric vector
Species.Coprobacter_fastidiosusa numeric vector
Species.Coprococcus_1_unclassa numeric vector
Species.Coprococcus_2_unclassa numeric vector
Species.Coprococcus_catusa numeric vector
Species.Coprococcus_comesa numeric vector
Species.Coprococcus_eutactusa numeric vector
Species.Coriobacteriaceae_unclassa numeric vector
Species.Corynebacterium_argentoratensea numeric vector
Species.Corynebacterium_duruma numeric vector
Species.Cosenzaea_myxofaciensa numeric vector
Species.Cryptobacterium_curtuma numeric vector
Species.Culturomica_massiliensisa numeric vector
Species.Cuneatibacter_caecimurisa numeric vector
Species.Defluviitaleaceae_UCG.011_unclassa numeric vector
Species.Desulfovibrio_desulfuricansa numeric vector
Species.Desulfovibrio_pigera numeric vector
Species.Desulfovibrio_simplexa numeric vector
Species.Desulfovibrio_unclassa numeric vector
Species.Desulfovibrio_vulgarisa numeric vector
Species.Dialister_invisusa numeric vector
Species.Dialister_micraerophilusa numeric vector
Species.Dialister_pneumosintesa numeric vector
Species.Dialister_propionicifaciensa numeric vector
Species.Dialister_succinatiphilusa numeric vector
Species.Dielma_fastidiosaa numeric vector
Species.Dorea_formicigeneransa numeric vector
Species.Dorea_unclassa numeric vector
Species.Drancourtella_massiliensisa numeric vector
Species.Dysgonomonas_capnocytophagoidesa numeric vector
Species.Dysgonomonas_gadeia numeric vector
Species.Dysgonomonas_mossiia numeric vector
Species.Eggerthella_lentaa numeric vector
Species.Eisenbergiella_massiliensisa numeric vector
Species.Eisenbergiella_tayia numeric vector
Species.Eisenbergiella_unclassa numeric vector
Species.Emergencia_timonensisa numeric vector
Species.Enterobacter_solia numeric vector
Species.Enterococcus_aviuma numeric vector
Species.Enterococcus_faecalisa numeric vector
Species.Enterococcus_gallinaruma numeric vector
Species.Enterorhabdus_unclassa numeric vector
Species.Epulopiscium_unclassa numeric vector
Species.Erysipelatoclostridium_ramosuma numeric vector
Species.Erysipelatoclostridium_unclassa numeric vector
Species.Erysipelotrichaceae_ge_unclassa numeric vector
Species.Erysipelotrichaceae_UCG.003_unclassa numeric vector
Species.Erysipelotrichaceae_UCG.004_unclassa numeric vector
Species.Erysipelotrichaceae_unclassa numeric vector
Species.Eubacterium_callanderia numeric vector
Species.Eubacterium_desmolansa numeric vector
Species.Eubacterium_limosuma numeric vector
Species.Eubacterium_ramulusa numeric vector
Species.Eubacterium_rectalea numeric vector
Species.Eubacterium_ventriosuma numeric vector
Species.Ewingella_americanaa numeric vector
Species.Extibacter_murisa numeric vector
Species.Ezakiella_unclassa numeric vector
Species.Faecalibacterium_prausnitziia numeric vector
Species.Faecalibacterium_unclassa numeric vector
Species.Faecalibaculum_unclassa numeric vector
Species.Family_XIII_AD3011_group_unclassa numeric vector
Species.Family_XIII_ge_unclassa numeric vector
Species.Family_XIII_UCG.001_unclassa numeric vector
Species.Family_XIII_unclassa numeric vector
Species.Finegoldia_magnaa numeric vector
Species.Flavonifractor_plautiia numeric vector
Species.Frisingicoccus_caecimurisa numeric vector
Species.Fusicatenibacter_saccharivoransa numeric vector
Species.Fusicatenibacter_unclassa numeric vector
Species.Fusobacterium_canifelinuma numeric vector
Species.Fusobacterium_equinuma numeric vector
Species.Fusobacterium_mortiferuma numeric vector
Species.Fusobacterium_nucleatuma numeric vector
Species.Fusobacterium_periodonticuma numeric vector
Species.Fusobacterium_simiaea numeric vector
Species.Fusobacterium_variuma numeric vector
Species.Gabonia_massiliensisa numeric vector
Species.Gelria_unclassa numeric vector
Species.Gemella_haemolysansa numeric vector
Species.Gemmiger_formicilisa numeric vector
Species.Gordonibacter_pamelaeaea numeric vector
Species.Gordonibacter_urolithinfaciensa numeric vector
Species.Granulicatella_adiacensa numeric vector
Species.Haemophilus_parainfluenzaea numeric vector
Species.Haemophilus_pittmaniaea numeric vector
Species.Hafnia_alveia numeric vector
Species.Holdemania_filiformisa numeric vector
Species.Holdemania_massiliensisa numeric vector
Species.Howardella_ureilyticaa numeric vector
Species.Hungatella_effluviia numeric vector
Species.Hydrogenoanaerobacterium_unclassa numeric vector
Species.Ihubacter_massiliensisa numeric vector
Species.Intestinibacter_bartlettiia numeric vector
Species.Intestinimonas_butyriciproducensa numeric vector
Species.Intestinimonas_unclassa numeric vector
Species.Jonquetella_anthropia numeric vector
Species.Lachnoanaerobaculum_oralea numeric vector
Species.Lachnoclostridium_10_unclassa numeric vector
Species.Lachnoclostridium_unclassa numeric vector
Species.Lachnospira_pectinoschizaa numeric vector
Species.Lachnospira_unclassa numeric vector
Species.Lachnospiraceae_FCS020_group_unclassa numeric vector
Species.Lachnospiraceae_ge_unclassa numeric vector
Species.Lachnospiraceae_ND3007_group_unclassa numeric vector
Species.Lachnospiraceae_NK4A136_group_unclassa numeric vector
Species.Lachnospiraceae_NK4B4_group_unclassa numeric vector
Species.Lachnospiraceae_UCG.001_unclassa numeric vector
Species.Lachnospiraceae_UCG.003_unclassa numeric vector
Species.Lachnospiraceae_UCG.004_unclassa numeric vector
Species.Lachnospiraceae_UCG.008_unclassa numeric vector
Species.Lachnospiraceae_UCG.010_unclassa numeric vector
Species.Lachnospiraceae_unclassa numeric vector
Species.Lachnospiraceae_XPB1014_group_unclassa numeric vector
Species.Lactobacillus_amylovorusa numeric vector
Species.Lactobacillus_apisa numeric vector
Species.Lactobacillus_caseia numeric vector
Species.Lactobacillus_delbrueckiia numeric vector
Species.Lactobacillus_fermentuma numeric vector
Species.Lactobacillus_gasseria numeric vector
Species.Lactobacillus_inersa numeric vector
Species.Lactobacillus_mucosaea numeric vector
Species.Lactobacillus_murinusa numeric vector
Species.Lactobacillus_pentosusa numeric vector
Species.Lactobacillus_pontisa numeric vector
Species.Lactobacillus_reuteria numeric vector
Species.Lactobacillus_rhamnosusa numeric vector
Species.Lactobacillus_rogosaea numeric vector
Species.Lactobacillus_sakeia numeric vector
Species.Lactobacillus_salivariusa numeric vector
Species.Lactobacillus_sanfranciscensisa numeric vector
Species.Lactococcus_lactisa numeric vector
Species.Lactococcus_pisciuma numeric vector
Species.Lactonifactor_longoviformisa numeric vector
Species.Lactonifactor_unclassa numeric vector
Species.Lentimonas_unclassa numeric vector
Species.Leptotrichia_trevisaniia numeric vector
Species.Leptotrichia_unclassa numeric vector
Species.Leuconostoc_geliduma numeric vector
Species.Leuconostoc_lactisa numeric vector
Species.Levyella_massiliensisa numeric vector
Species.Longibaculum_murisa numeric vector
Species.Longicatena_caecimurisa numeric vector
Species.Macellibacteroides_fermentansa numeric vector
Species.Marvinbryantia_unclassa numeric vector
Species.Massiliomicrobiota_timonensisa numeric vector
Species.Megamonas_rupellensisa numeric vector
Species.Megasphaera_massiliensisa numeric vector
Species.Megasphaera_micronuciformisa numeric vector
Species.Megasphaera_unclassa numeric vector
Species.Mitochondria_ge_unclassa numeric vector
Species.Mogibacterium_pumiluma numeric vector
Species.Mogibacterium_timiduma numeric vector
Species.Mogibacterium_unclassa numeric vector
Species.Mollicutes_RF9_ge_unclassa numeric vector
Species.Morganella_morganiia numeric vector
Species.Moryella_unclassa numeric vector
Species.Muricomes_intestinia numeric vector
Species.NB1.n_ge_unclassa numeric vector
Species.Negativicoccus_massiliensisa numeric vector
Species.Neglecta_timonensisa numeric vector
Species.Neisseria_cinereaa numeric vector
Species.Neisseria_mucosaa numeric vector
Species.Odoribacter_laneusa numeric vector
Species.Odoribacter_splanchnicusa numeric vector
Species.Olsenella_scatoligenesa numeric vector
Species.Olsenella_ulia numeric vector
Species.Olsenella_unclassa numeric vector
Species.Oribacterium_asaccharolyticuma numeric vector
Species.Oscillibacter_ruminantiuma numeric vector
Species.Oscillibacter_unclassa numeric vector
Species.Oscillospira_unclassa numeric vector
Species.Parabacteroides_distasonisa numeric vector
Species.Parabacteroides_faecisa numeric vector
Species.Parabacteroides_goldsteiniia numeric vector
Species.Parabacteroides_gordoniia numeric vector
Species.Parabacteroides_johnsoniia numeric vector
Species.Parabacteroides_merdaea numeric vector
Species.Parabacteroides_unclassa numeric vector
Species.Paraprevotella_claraa numeric vector
Species.Parascardovia_denticolensa numeric vector
Species.Parasutterella_excrementihominisa numeric vector
Species.Parvimonas_micraa numeric vector
Species.Pediococcus_acidilacticia numeric vector
Species.Peptoclostridium_difficilea numeric vector
Species.Peptococcaceae_unclassa numeric vector
Species.Peptococcus_nigera numeric vector
Species.Peptococcus_unclassa numeric vector
Species.Peptoniphilus_coxiia numeric vector
Species.Peptoniphilus_hareia numeric vector
Species.Peptoniphilus_lacrimalisa numeric vector
Species.Peptostreptococcus_anaerobiusa numeric vector
Species.Peptostreptococcus_russelliia numeric vector
Species.Peptostreptococcus_stomatisa numeric vector
Species.Phascolarctobacterium_faeciuma numeric vector
Species.Phascolarctobacterium_succinatutensa numeric vector
Species.Phascolarctobacterium_unclassa numeric vector
Species.Phocea_massiliensisa numeric vector
Species.Porphyromonadaceae_unclassa numeric vector
Species.Porphyromonas_asaccharolyticaa numeric vector
Species.Porphyromonas_bennonisa numeric vector
Species.Porphyromonas_catoniaea numeric vector
Species.Porphyromonas_someraea numeric vector
Species.Porphyromonas_uenonisa numeric vector
Species.Prevotella_7_unclassa numeric vector
Species.Prevotella_9_unclassa numeric vector
Species.Prevotella_biviaa numeric vector
Species.Prevotella_buccaea numeric vector
Species.Prevotella_buccalisa numeric vector
Species.Prevotella_copria numeric vector
Species.Prevotella_corporisa numeric vector
Species.Prevotella_denticolaa numeric vector
Species.Prevotella_disiensa numeric vector
Species.Prevotella_fuscaa numeric vector
Species.Prevotella_histicolaa numeric vector
Species.Prevotella_melaninogenicaa numeric vector
Species.Prevotella_multisaccharivoraxa numeric vector
Species.Prevotella_nanceiensisa numeric vector
Species.Prevotella_orisa numeric vector
Species.Prevotella_salivaea numeric vector
Species.Prevotella_stercoreaa numeric vector
Species.Prevotella_timonensisa numeric vector
Species.Prevotellaceae_NK3B31_group_unclassa numeric vector
Species.Prevotellaceae_UCG.001_unclassa numeric vector
Species.Prevotellaceae_unclassa numeric vector
Species.Prevotellamassilia_timonensisa numeric vector
Species.Proteus_hauseria numeric vector
Species.Providencia_alcalifaciensa numeric vector
Species.Pseudobutyrivibrio_unclassa numeric vector
Species.Pseudoflavonifractor_capillosusa numeric vector
Species.Pseudomonas_aeruginosaa numeric vector
Species.Pseudomonas_fluorescensa numeric vector
Species.Pseudoramibacter_alactolyticusa numeric vector
Species.Pyramidobacter_piscolensa numeric vector
Species.Raoultella_ornithinolyticaa numeric vector
Species.Raoultibacter_massiliensisa numeric vector
Species.Rhodospirillaceae_unclassa numeric vector
Species.Rikenella_unclassa numeric vector
Species.Rikenellaceae_RC9_gut_group_unclassa numeric vector
Species.Robinsoniella_peoriensisa numeric vector
Species.Romboutsia_ilealisa numeric vector
Species.Roseburia_faecisa numeric vector
Species.Roseburia_hominisa numeric vector
Species.Roseburia_intestinalisa numeric vector
Species.Roseburia_inulinivoransa numeric vector
Species.Roseburia_unclassa numeric vector
Species.Rothia_dentocariosaa numeric vector
Species.Rothia_mucilaginosaa numeric vector
Species.Ruminiclostridium_1_unclassa numeric vector
Species.Ruminiclostridium_5_unclassa numeric vector
Species.Ruminiclostridium_6_unclassa numeric vector
Species.Ruminiclostridium_9_unclassa numeric vector
Species.Ruminiclostridium_unclassa numeric vector
Species.Ruminococcaceae_ge_unclassa numeric vector
Species.Ruminococcaceae_NK4A214_group_unclassa numeric vector
Species.Ruminococcaceae_UCG.002_unclassa numeric vector
Species.Ruminococcaceae_UCG.003_unclassa numeric vector
Species.Ruminococcaceae_UCG.004_unclassa numeric vector
Species.Ruminococcaceae_UCG.005_unclassa numeric vector
Species.Ruminococcaceae_UCG.008_unclassa numeric vector
Species.Ruminococcaceae_UCG.009_unclassa numeric vector
Species.Ruminococcaceae_UCG.010_unclassa numeric vector
Species.Ruminococcaceae_UCG.011_unclassa numeric vector
Species.Ruminococcaceae_UCG.013_unclassa numeric vector
Species.Ruminococcaceae_UCG.014_unclassa numeric vector
Species.Ruminococcaceae_unclassa numeric vector
Species.Ruminococcaceae_V9D2013_group_unclassa numeric vector
Species.Ruminococcus_1_unclassa numeric vector
Species.Ruminococcus_2_unclassa numeric vector
Species.Ruminococcus_callidusa numeric vector
Species.Ruminococcus_faecisa numeric vector
Species.Ruminococcus_lactarisa numeric vector
Species.Sarcina_ventriculia numeric vector
Species.Scardovia_wiggsiaea numeric vector
Species.Selenomonas_infelixa numeric vector
Species.Sellimonas_unclassa numeric vector
Species.Senegalimassilia_anaerobiaa numeric vector
Species.Senegalimassilia_unclassa numeric vector
Species.Shigella_flexneria numeric vector
Species.Shuttleworthia_satellesa numeric vector
Species.Shuttleworthia_unclassa numeric vector
Species.Slackia_exiguaa numeric vector
Species.Slackia_isoflavoniconvertensa numeric vector
Species.Slackia_piriformisa numeric vector
Species.Solobacterium_mooreia numeric vector
Species.Sphingomonas_yabuuchiaea numeric vector
Species.Staphylococcus_aureusa numeric vector
Species.Stomatobaculum_longuma numeric vector
Species.Streptococcus_agalactiaea numeric vector
Species.Streptococcus_alactolyticusa numeric vector
Species.Streptococcus_anginosusa numeric vector
Species.Streptococcus_dentirousettia numeric vector
Species.Streptococcus_dentisania numeric vector
Species.Streptococcus_intermediusa numeric vector
Species.Streptococcus_lutetiensisa numeric vector
Species.Streptococcus_mutansa numeric vector
Species.Streptococcus_oralisa numeric vector
Species.Streptococcus_parasanguinisa numeric vector
Species.Streptococcus_sanguinisa numeric vector
Species.Streptococcus_thermophilusa numeric vector
Species.Subdoligranulum_unclassa numeric vector
Species.Subdoligranulum_variabilea numeric vector
Species.Succiniclasticum_unclassa numeric vector
Species.Sutterella_stercoricanisa numeric vector
Species.Sutterella_unclassa numeric vector
Species.Sutterella_wadsworthensisa numeric vector
Species.Synergistes_unclassa numeric vector
Species.Syntrophococcus_sucromutansa numeric vector
Species.Terrisporobacter_mayombeia numeric vector
Species.Turicibacter_sanguinisa numeric vector
Species.Turicimonas_murisa numeric vector
Species.Tyzzerella_3_unclassa numeric vector
Species.Tyzzerella_nexilisa numeric vector
Species.Tyzzerella_unclassa numeric vector
Species.uncultured_ge_unclassa numeric vector
Species.vadinBE97_ge_unclassa numeric vector
Species.Varibaculum_cambriensea numeric vector
Species.Veillonella_atypicaa numeric vector
Species.Veillonella_dispara numeric vector
Species.Veillonella_parvulaa numeric vector
Species.Veillonella_rattia numeric vector
Species.Veillonella_unclassa numeric vector
Species.Veillonellaceae_unclassa numeric vector
Species.Victivallis_unclassa numeric vector
Species.Weissella_confusaa numeric vector
Examples
1
2
LyonsZhang/ProgPermute documentation built on July 22, 2020, 4:09 p.m.
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Usage
1 | data("testdata2")
|
Format
A data frame with 88 observations on the following 842 variables.
variablea numeric vector
Phylum.Actinobacteriaa numeric vector
Phylum.Bacteroidetesa numeric vector
Phylum.Firmicutesa numeric vector
Phylum.Fusobacteriaa numeric vector
Phylum.Lentisphaeraea numeric vector
Phylum.Proteobacteriaa numeric vector
Phylum.Synergistetesa numeric vector
Phylum.Tenericutesa numeric vector
Phylum.Verrucomicrobiaa numeric vector
Class.Actinobacteriaa numeric vector
Class.Alphaproteobacteriaa numeric vector
Class.Bacillia numeric vector
Class.Bacteroidiaa numeric vector
Class.Betaproteobacteriaa numeric vector
Class.Clostridiaa numeric vector
Class.Coriobacteriiaa numeric vector
Class.Deltaproteobacteriaa numeric vector
Class.Epsilonproteobacteriaa numeric vector
Class.Erysipelotrichiaa numeric vector
Class.Fusobacteriiaa numeric vector
Class.Gammaproteobacteriaa numeric vector
Class.Lentisphaeriaa numeric vector
Class.Mollicutesa numeric vector
Class.Negativicutesa numeric vector
Class.Opitutaea numeric vector
Class.Synergistiaa numeric vector
Class.Verrucomicrobiaea numeric vector
Order.Actinomycetalesa numeric vector
Order.Anaeroplasmatalesa numeric vector
Order.Bacillalesa numeric vector
Order.Bacteroidalesa numeric vector
Order.Bifidobacterialesa numeric vector
Order.Burkholderialesa numeric vector
Order.Campylobacteralesa numeric vector
Order.Clostridialesa numeric vector
Order.Coriobacterialesa numeric vector
Order.Corynebacterialesa numeric vector
Order.Desulfovibrionalesa numeric vector
Order.Enterobacterialesa numeric vector
Order.Erysipelotrichalesa numeric vector
Order.Fusobacterialesa numeric vector
Order.Lactobacillalesa numeric vector
Order.Micrococcalesa numeric vector
Order.Mollicutes_RF9a numeric vector
Order.NB1.na numeric vector
Order.Neisserialesa numeric vector
Order.Pasteurellalesa numeric vector
Order.Pseudomonadalesa numeric vector
Order.Puniceicoccalesa numeric vector
Order.Rhodospirillalesa numeric vector
Order.Rickettsialesa numeric vector
Order.Selenomonadalesa numeric vector
Order.Sphingomonadalesa numeric vector
Order.Synergistalesa numeric vector
Order.Thermoanaerobacteralesa numeric vector
Order.Verrucomicrobialesa numeric vector
Order.Victivallalesa numeric vector
Family.Acidaminococcaceaea numeric vector
Family.Actinomycetaceaea numeric vector
Family.Aerococcaceaea numeric vector
Family.Alcaligenaceaea numeric vector
Family.Anaeroplasmataceaea numeric vector
Family.Bacillaceaea numeric vector
Family.Bacteroidaceaea numeric vector
Family.Bacteroidales_S24.7_groupa numeric vector
Family.Bacteroidales_unclassa numeric vector
Family.Bifidobacteriaceaea numeric vector
Family.Caldicoprobacteraceaea numeric vector
Family.Campylobacteraceaea numeric vector
Family.Carnobacteriaceaea numeric vector
Family.Christensenellaceaea numeric vector
Family.Clostridiaceae_1a numeric vector
Family.Clostridiales_vadinBB60_groupa numeric vector
Family.Coriobacteriaceaea numeric vector
Family.Corynebacteriaceaea numeric vector
Family.Defluviitaleaceaea numeric vector
Family.Desulfovibrionaceaea numeric vector
Family.Enterobacteriaceaea numeric vector
Family.Enterococcaceaea numeric vector
Family.Erysipelotrichaceaea numeric vector
Family.Eubacteriaceaea numeric vector
Family.Family_XIa numeric vector
Family.Family_XIIIa numeric vector
Family.Fusobacteriaceaea numeric vector
Family.Lachnospiraceaea numeric vector
Family.Lactobacillaceaea numeric vector
Family.Leptotrichiaceaea numeric vector
Family.Leuconostocaceaea numeric vector
Family.Micrococcaceaea numeric vector
Family.Mitochondriaa numeric vector
Family.Mollicutes_RF9_faa numeric vector
Family.NB1.n_faa numeric vector
Family.Neisseriaceaea numeric vector
Family.Pasteurellaceaea numeric vector
Family.Peptococcaceaea numeric vector
Family.Peptostreptococcaceaea numeric vector
Family.Porphyromonadaceaea numeric vector
Family.Prevotellaceaea numeric vector
Family.Pseudomonadaceaea numeric vector
Family.Puniceicoccaceaea numeric vector
Family.Rhodospirillaceaea numeric vector
Family.Rikenellaceaea numeric vector
Family.Ruminococcaceaea numeric vector
Family.Sphingomonadaceaea numeric vector
Family.Staphylococcaceaea numeric vector
Family.Streptococcaceaea numeric vector
Family.Synergistaceaea numeric vector
Family.Thermoanaerobacteraceaea numeric vector
Family.vadinBE97a numeric vector
Family.Veillonellaceaea numeric vector
Family.Verrucomicrobiaceaea numeric vector
Family.Victivallaceaea numeric vector
Genus.Abiotrophiaa numeric vector
Genus.Acetanaerobacteriuma numeric vector
Genus.Acidaminococcusa numeric vector
Genus.Actinomycesa numeric vector
Genus.Actinotignuma numeric vector
Genus.Adlercreutziaa numeric vector
Genus.Akkermansiaa numeric vector
Genus.Alistipesa numeric vector
Genus.Allisonellaa numeric vector
Genus.Alloprevotellaa numeric vector
Genus.Alloscardoviaa numeric vector
Genus.Anaerococcusa numeric vector
Genus.Anaerofiluma numeric vector
Genus.Anaerofustisa numeric vector
Genus.Anaeroglobusa numeric vector
Genus.Anaeroplasmaa numeric vector
Genus.Anaerosinusa numeric vector
Genus.Anaerosporobactera numeric vector
Genus.Anaerostipesa numeric vector
Genus.Anaerotruncusa numeric vector
Genus.Anaerovibrioa numeric vector
Genus.Atopobiuma numeric vector
Genus.Bacillusa numeric vector
Genus.Bacteroidales_S24.7_group_gea numeric vector
Genus.Bacteroidesa numeric vector
Genus.Barnesiellaa numeric vector
Genus.Bifidobacteriuma numeric vector
Genus.Bilophilaa numeric vector
Genus.Blautiaa numeric vector
Genus.Butyricicoccusa numeric vector
Genus.Butyricimonasa numeric vector
Genus.Caldicoprobactera numeric vector
Genus.Campylobactera numeric vector
Genus.Candidatus_Soleaferreaa numeric vector
Genus.Candidatus_Stoquefichusa numeric vector
Genus.Caproiciproducensa numeric vector
Genus.Catabactera numeric vector
Genus.Catenibacteriuma numeric vector
Genus.Catenisphaeraa numeric vector
Genus.Cellulosilyticuma numeric vector
Genus.Cerasicoccusa numeric vector
Genus.Cetobacteriuma numeric vector
Genus.Christensenellaa numeric vector
Genus.Christensenellaceae_R.7_groupa numeric vector
Genus.Christensenellaceae_unclassa numeric vector
Genus.Citrobactera numeric vector
Genus.Cloacibacillusa numeric vector
Genus.Clostridiales_vadinBB60_group_gea numeric vector
Genus.Clostridium_sensu_stricto_1a numeric vector
Genus.Clostridium_sensu_stricto_13a numeric vector
Genus.Clostridium_sensu_stricto_2a numeric vector
Genus.Collinsellaa numeric vector
Genus.Coprobacillusa numeric vector
Genus.Coprobactera numeric vector
Genus.Coprococcus_1a numeric vector
Genus.Coprococcus_2a numeric vector
Genus.Coprococcus_3a numeric vector
Genus.Coriobacteriaceae_unclassa numeric vector
Genus.Corynebacteriuma numeric vector
Genus.Cosenzaeaa numeric vector
Genus.Cryptobacteriuma numeric vector
Genus.Defluviitaleaceae_UCG.011a numeric vector
Genus.Desulfovibrioa numeric vector
Genus.Dialistera numeric vector
Genus.Dielmaa numeric vector
Genus.Doreaa numeric vector
Genus.Dysgonomonasa numeric vector
Genus.Eggerthellaa numeric vector
Genus.Eisenbergiellaa numeric vector
Genus.Enterobactera numeric vector
Genus.Enterococcusa numeric vector
Genus.Enterorhabdusa numeric vector
Genus.Epulopisciuma numeric vector
Genus.Erysipelatoclostridiuma numeric vector
Genus.Erysipelotrichaceae_gea numeric vector
Genus.Erysipelotrichaceae_UCG.003a numeric vector
Genus.Erysipelotrichaceae_UCG.004a numeric vector
Genus.Erysipelotrichaceae_unclassa numeric vector
Genus.Escherichia.Shigellaa numeric vector
Genus.Eubacteriuma numeric vector
Genus.Ezakiellaa numeric vector
Genus.Faecalibacteriuma numeric vector
Genus.Faecalibaculuma numeric vector
Genus.Faecalicoccusa numeric vector
Genus.Faecalitaleaa numeric vector
Genus.Family_XIII_AD3011_groupa numeric vector
Genus.Family_XIII_gea numeric vector
Genus.Family_XIII_UCG.001a numeric vector
Genus.Family_XIII_unclassa numeric vector
Genus.Finegoldiaa numeric vector
Genus.Flavonifractora numeric vector
Genus.Fusicatenibactera numeric vector
Genus.Fusobacteriuma numeric vector
Genus.Gelriaa numeric vector
Genus.Gemellaa numeric vector
Genus.Gordonibactera numeric vector
Genus.Granulicatellaa numeric vector
Genus.Haemophilusa numeric vector
Genus.Hafnia.Obesumbacteriuma numeric vector
Genus.Holdemanellaa numeric vector
Genus.Holdemaniaa numeric vector
Genus.Howardellaa numeric vector
Genus.Hungatellaa numeric vector
Genus.Hydrogenoanaerobacteriuma numeric vector
Genus.Intestinibactera numeric vector
Genus.Intestinimonasa numeric vector
Genus.Jonquetellaa numeric vector
Genus.Lachnoanaerobaculuma numeric vector
Genus.Lachnoclostridiuma numeric vector
Genus.Lachnoclostridium_10a numeric vector
Genus.Lachnospiraa numeric vector
Genus.Lachnospiraceae_FCS020_groupa numeric vector
Genus.Lachnospiraceae_gea numeric vector
Genus.Lachnospiraceae_ND3007_groupa numeric vector
Genus.Lachnospiraceae_NK4A136_groupa numeric vector
Genus.Lachnospiraceae_NK4B4_groupa numeric vector
Genus.Lachnospiraceae_UCG.001a numeric vector
Genus.Lachnospiraceae_UCG.003a numeric vector
Genus.Lachnospiraceae_UCG.004a numeric vector
Genus.Lachnospiraceae_UCG.008a numeric vector
Genus.Lachnospiraceae_UCG.010a numeric vector
Genus.Lachnospiraceae_unclassa numeric vector
Genus.Lachnospiraceae_XPB1014_groupa numeric vector
Genus.Lactobacillusa numeric vector
Genus.Lactococcusa numeric vector
Genus.Lactonifactora numeric vector
Genus.Lentimonasa numeric vector
Genus.Leptotrichiaa numeric vector
Genus.Leuconostoca numeric vector
Genus.Macellibacteroidesa numeric vector
Genus.Marvinbryantiaa numeric vector
Genus.Megamonasa numeric vector
Genus.Megasphaeraa numeric vector
Genus.Mitochondria_gea numeric vector
Genus.Mogibacteriuma numeric vector
Genus.Mollicutes_RF9_gea numeric vector
Genus.Morganellaa numeric vector
Genus.Moryellaa numeric vector
Genus.Murdochiellaa numeric vector
Genus.NB1.n_gea numeric vector
Genus.Negativicoccusa numeric vector
Genus.Neisseriaa numeric vector
Genus.Odoribactera numeric vector
Genus.Olsenellaa numeric vector
Genus.Oribacteriuma numeric vector
Genus.Oscillibactera numeric vector
Genus.Oscillospiraa numeric vector
Genus.Paeniclostridiuma numeric vector
Genus.Parabacteroidesa numeric vector
Genus.Paraprevotellaa numeric vector
Genus.Parascardoviaa numeric vector
Genus.Parasutterellaa numeric vector
Genus.Parvimonasa numeric vector
Genus.Pediococcusa numeric vector
Genus.Peptoclostridiuma numeric vector
Genus.Peptococcaceae_unclassa numeric vector
Genus.Peptococcusa numeric vector
Genus.Peptoniphilusa numeric vector
Genus.Peptostreptococcusa numeric vector
Genus.Phascolarctobacteriuma numeric vector
Genus.Porphyromonadaceae_unclassa numeric vector
Genus.Porphyromonasa numeric vector
Genus.Prevotellaa numeric vector
Genus.Prevotella_2a numeric vector
Genus.Prevotella_6a numeric vector
Genus.Prevotella_7a numeric vector
Genus.Prevotella_9a numeric vector
Genus.Prevotellaceae_NK3B31_groupa numeric vector
Genus.Prevotellaceae_UCG.001a numeric vector
Genus.Prevotellaceae_unclassa numeric vector
Genus.Proteusa numeric vector
Genus.Providenciaa numeric vector
Genus.Pseudobutyrivibrioa numeric vector
Genus.Pseudoflavonifractora numeric vector
Genus.Pseudomonasa numeric vector
Genus.Pseudoramibactera numeric vector
Genus.Pyramidobactera numeric vector
Genus.Raoultellaa numeric vector
Genus.Rhodospirillaceae_unclassa numeric vector
Genus.Rikenellaa numeric vector
Genus.Rikenellaceae_RC9_gut_groupa numeric vector
Genus.Robinsoniellaa numeric vector
Genus.Romboutsiaa numeric vector
Genus.Roseburiaa numeric vector
Genus.Rothiaa numeric vector
Genus.Ruminiclostridiuma numeric vector
Genus.Ruminiclostridium_1a numeric vector
Genus.Ruminiclostridium_5a numeric vector
Genus.Ruminiclostridium_6a numeric vector
Genus.Ruminiclostridium_9a numeric vector
Genus.Ruminococcaceae_gea numeric vector
Genus.Ruminococcaceae_NK4A214_groupa numeric vector
Genus.Ruminococcaceae_UCG.002a numeric vector
Genus.Ruminococcaceae_UCG.003a numeric vector
Genus.Ruminococcaceae_UCG.004a numeric vector
Genus.Ruminococcaceae_UCG.005a numeric vector
Genus.Ruminococcaceae_UCG.008a numeric vector
Genus.Ruminococcaceae_UCG.009a numeric vector
Genus.Ruminococcaceae_UCG.010a numeric vector
Genus.Ruminococcaceae_UCG.011a numeric vector
Genus.Ruminococcaceae_UCG.013a numeric vector
Genus.Ruminococcaceae_UCG.014a numeric vector
Genus.Ruminococcaceae_unclassa numeric vector
Genus.Ruminococcaceae_V9D2013_groupa numeric vector
Genus.Ruminococcus_1a numeric vector
Genus.Ruminococcus_2a numeric vector
Genus.Sarcinaa numeric vector
Genus.Scardoviaa numeric vector
Genus.Selenomonas_3a numeric vector
Genus.Sellimonasa numeric vector
Genus.Senegalimassiliaa numeric vector
Genus.Serratiaa numeric vector
Genus.Shuttleworthiaa numeric vector
Genus.Slackiaa numeric vector
Genus.Solobacteriuma numeric vector
Genus.Sphingomonasa numeric vector
Genus.Staphylococcusa numeric vector
Genus.Stomatobaculuma numeric vector
Genus.Streptococcusa numeric vector
Genus.Subdoligranuluma numeric vector
Genus.Succiniclasticuma numeric vector
Genus.Sutterellaa numeric vector
Genus.Synergistesa numeric vector
Genus.Syntrophococcusa numeric vector
Genus.Terrisporobactera numeric vector
Genus.Turicibactera numeric vector
Genus.Tyzzerellaa numeric vector
Genus.Tyzzerella_3a numeric vector
Genus.Tyzzerella_4a numeric vector
Genus.uncultured_gea numeric vector
Genus.vadinBE97_gea numeric vector
Genus.Varibaculuma numeric vector
Genus.Veillonellaa numeric vector
Genus.Veillonellaceae_gea numeric vector
Genus.Veillonellaceae_unclassa numeric vector
Genus.Victivallisa numeric vector
Genus.Weissellaa numeric vector
Species.Bacteroides_coagulansa numeric vector
Species.Bacteroides_pectinophilusa numeric vector
Species.Clostridium_aldenensea numeric vector
Species.Clostridium_aminovalericuma numeric vector
Species.Clostridium_bolteaea numeric vector
Species.Clostridium_clostridioformea numeric vector
Species.Clostridium_cocleatuma numeric vector
Species.Clostridium_glycyrrhizinilyticuma numeric vector
Species.Clostridium_hathewayia numeric vector
Species.Clostridium_hiranonisa numeric vector
Species.Clostridium_hylemonaea numeric vector
Species.Clostridium_innocuuma numeric vector
Species.Clostridium_lactatifermentansa numeric vector
Species.Clostridium_lavalensea numeric vector
Species.Clostridium_leptuma numeric vector
Species.Clostridium_methylpentosuma numeric vector
Species.Clostridium_oroticuma numeric vector
Species.Clostridium_saccharogumiaa numeric vector
Species.Clostridium_scindensa numeric vector
Species.Clostridium_sordelliia numeric vector
Species.Clostridium_spiroformea numeric vector
Species.Clostridium_symbiosuma numeric vector
Species.Eubacterium_biformea numeric vector
Species.Eubacterium_contortuma numeric vector
Species.Eubacterium_cylindroidesa numeric vector
Species.Eubacterium_dolichuma numeric vector
Species.Eubacterium_eligensa numeric vector
Species.Eubacterium_fissicatenaa numeric vector
Species.Eubacterium_halliia numeric vector
Species.Eubacterium_siraeuma numeric vector
Species.Eubacterium_sulcia numeric vector
Species.Ruminococcus_gnavusa numeric vector
Species.Ruminococcus_obeuma numeric vector
Species.Ruminococcus_torquesa numeric vector
Species.Streptococcus_pleomorphusa numeric vector
Species.Abiotrophia_defectivaa numeric vector
Species.Acetanaerobacterium_unclassa numeric vector
Species.Acidaminococcus_intestinia numeric vector
Species.Actinomyces_europaeusa numeric vector
Species.Actinomyces_gerencseriaea numeric vector
Species.Actinomyces_graevenitziia numeric vector
Species.Actinomyces_ihumiia numeric vector
Species.Actinomyces_israeliia numeric vector
Species.Actinomyces_johnsoniia numeric vector
Species.Actinomyces_odontolyticusa numeric vector
Species.Actinomyces_unclassa numeric vector
Species.Actinomyces_viscosusa numeric vector
Species.Actinotignum_unclassa numeric vector
Species.Acutalibacter_murisa numeric vector
Species.Adlercreutzia_equolifaciensa numeric vector
Species.Akkermansia_muciniphilaa numeric vector
Species.Alistipes_finegoldiia numeric vector
Species.Alistipes_ihumiia numeric vector
Species.Alistipes_indistinctusa numeric vector
Species.Alistipes_obesia numeric vector
Species.Alistipes_onderdonkiia numeric vector
Species.Alistipes_putredinisa numeric vector
Species.Alistipes_senegalensisa numeric vector
Species.Alistipes_shahiia numeric vector
Species.Alistipes_unclassa numeric vector
Species.Allisonella_histaminiformansa numeric vector
Species.Alloprevotella_unclassa numeric vector
Species.Alloscardovia_omnicolensa numeric vector
Species.Anaerococcus_obesiensisa numeric vector
Species.Anaerococcus_vaginalisa numeric vector
Species.Anaerofilum_pentosovoransa numeric vector
Species.Anaerofilum_unclassa numeric vector
Species.Anaerofustis_stercorihominisa numeric vector
Species.Anaeroglobus_geminatusa numeric vector
Species.Anaeromassilibacillus_senegalensisa numeric vector
Species.Anaeroplasma_unclassa numeric vector
Species.Anaerosinus_glycerinia numeric vector
Species.Anaerosporobacter_mobilisa numeric vector
Species.Anaerostipes_caccaea numeric vector
Species.Anaerostipes_hadrusa numeric vector
Species.Anaerostipes_unclassa numeric vector
Species.Anaerotruncus_colihominisa numeric vector
Species.Anaerotruncus_unclassa numeric vector
Species.Anaerovibrio_unclassa numeric vector
Species.Atopobium_parvuluma numeric vector
Species.Bacillus_hisashiia numeric vector
Species.Bacteroidales_S24.7_group_ge_unclassa numeric vector
Species.Bacteroides_caccaea numeric vector
Species.Bacteroides_caecimurisa numeric vector
Species.Bacteroides_cellulosilyticusa numeric vector
Species.Bacteroides_coprocolaa numeric vector
Species.Bacteroides_doreia numeric vector
Species.Bacteroides_eggerthiia numeric vector
Species.Bacteroides_finegoldiia numeric vector
Species.Bacteroides_fragilisa numeric vector
Species.Bacteroides_intestinalisa numeric vector
Species.Bacteroides_massiliensisa numeric vector
Species.Bacteroides_nordiia numeric vector
Species.Bacteroides_oleiciplenusa numeric vector
Species.Bacteroides_ovatusa numeric vector
Species.Bacteroides_plebeiusa numeric vector
Species.Bacteroides_reticulotermitisa numeric vector
Species.Bacteroides_rodentiuma numeric vector
Species.Bacteroides_salyersiaea numeric vector
Species.Bacteroides_sartoriia numeric vector
Species.Bacteroides_stercorisa numeric vector
Species.Bacteroides_thetaiotaomicrona numeric vector
Species.Bacteroides_unclassa numeric vector
Species.Bacteroides_uniformisa numeric vector
Species.Bacteroides_vulgatusa numeric vector
Species.Bacteroides_xylanisolvensa numeric vector
Species.Barnesiella_intestinihominisa numeric vector
Species.Bifidobacterium_animalisa numeric vector
Species.Bifidobacterium_bifiduma numeric vector
Species.Bifidobacterium_brevea numeric vector
Species.Bifidobacterium_dentiuma numeric vector
Species.Bifidobacterium_kashiwanohensea numeric vector
Species.Bilophila_unclassa numeric vector
Species.Blautia_caecimurisa numeric vector
Species.Blautia_coccoidesa numeric vector
Species.Blautia_gluceraseaa numeric vector
Species.Blautia_hanseniia numeric vector
Species.Blautia_hydrogenotrophicaa numeric vector
Species.Blautia_lutia numeric vector
Species.Blautia_unclassa numeric vector
Species.Butyricicoccus_pullicaecoruma numeric vector
Species.Butyricicoccus_unclassa numeric vector
Species.Butyricimonas_faecihominisa numeric vector
Species.Butyricimonas_paravirosaa numeric vector
Species.Butyricimonas_synergisticaa numeric vector
Species.Butyricimonas_unclassa numeric vector
Species.Butyricimonas_virosaa numeric vector
Species.Caldicoprobacter_unclassa numeric vector
Species.Campylobacter_concisusa numeric vector
Species.Campylobacter_gracilisa numeric vector
Species.Campylobacter_unclassa numeric vector
Species.Candidatus_Soleaferrea_unclassa numeric vector
Species.Candidatus_Stoquefichus_unclassa numeric vector
Species.Caproiciproducens_unclassa numeric vector
Species.Catabacter_hongkongensisa numeric vector
Species.Catenibacterium_mitsuokaia numeric vector
Species.Catenisphaera_unclassa numeric vector
Species.Cellulosilyticum_unclassa numeric vector
Species.Cerasicoccus_arenaea numeric vector
Species.Cetobacterium_someraea numeric vector
Species.Christensenella_massiliensisa numeric vector
Species.Christensenella_minutaa numeric vector
Species.Christensenella_timonensisa numeric vector
Species.Christensenellaceae_R.7_group_unclassa numeric vector
Species.Christensenellaceae_unclassa numeric vector
Species.Citrobacter_farmeria numeric vector
Species.Citrobacter_freundiia numeric vector
Species.Cloacibacillus_evryensisa numeric vector
Species.Cloacibacillus_porcoruma numeric vector
Species.Clostridiales_vadinBB60_group_ge_unclassa numeric vector
Species.Clostridium_argentinensea numeric vector
Species.Clostridium_butyricuma numeric vector
Species.Clostridium_cadaverisa numeric vector
Species.Clostridium_dakarensea numeric vector
Species.Clostridium_disporicuma numeric vector
Species.Clostridium_jeddahensea numeric vector
Species.Clostridium_paraputrificuma numeric vector
Species.Clostridium_perfringensa numeric vector
Species.Clostridium_saccharobutylicuma numeric vector
Species.Clostridium_sartagoformea numeric vector
Species.Clostridium_saudiia numeric vector
Species.Clostridium_sensu_stricto_1_unclassa numeric vector
Species.Clostridium_subterminalea numeric vector
Species.Clostridium_tertiuma numeric vector
Species.Collinsella_aerofaciensa numeric vector
Species.Collinsella_intestinalisa numeric vector
Species.Collinsella_tanakaeia numeric vector
Species.Coprobacillus_cateniformisa numeric vector
Species.Coprobacter_fastidiosusa numeric vector
Species.Coprococcus_1_unclassa numeric vector
Species.Coprococcus_2_unclassa numeric vector
Species.Coprococcus_catusa numeric vector
Species.Coprococcus_comesa numeric vector
Species.Coprococcus_eutactusa numeric vector
Species.Coriobacteriaceae_unclassa numeric vector
Species.Corynebacterium_argentoratensea numeric vector
Species.Corynebacterium_duruma numeric vector
Species.Cosenzaea_myxofaciensa numeric vector
Species.Cryptobacterium_curtuma numeric vector
Species.Culturomica_massiliensisa numeric vector
Species.Cuneatibacter_caecimurisa numeric vector
Species.Defluviitaleaceae_UCG.011_unclassa numeric vector
Species.Desulfovibrio_desulfuricansa numeric vector
Species.Desulfovibrio_pigera numeric vector
Species.Desulfovibrio_simplexa numeric vector
Species.Desulfovibrio_unclassa numeric vector
Species.Desulfovibrio_vulgarisa numeric vector
Species.Dialister_invisusa numeric vector
Species.Dialister_micraerophilusa numeric vector
Species.Dialister_pneumosintesa numeric vector
Species.Dialister_propionicifaciensa numeric vector
Species.Dialister_succinatiphilusa numeric vector
Species.Dielma_fastidiosaa numeric vector
Species.Dorea_formicigeneransa numeric vector
Species.Dorea_unclassa numeric vector
Species.Drancourtella_massiliensisa numeric vector
Species.Dysgonomonas_capnocytophagoidesa numeric vector
Species.Dysgonomonas_gadeia numeric vector
Species.Dysgonomonas_mossiia numeric vector
Species.Eggerthella_lentaa numeric vector
Species.Eisenbergiella_massiliensisa numeric vector
Species.Eisenbergiella_tayia numeric vector
Species.Eisenbergiella_unclassa numeric vector
Species.Emergencia_timonensisa numeric vector
Species.Enterobacter_solia numeric vector
Species.Enterococcus_aviuma numeric vector
Species.Enterococcus_faecalisa numeric vector
Species.Enterococcus_gallinaruma numeric vector
Species.Enterorhabdus_unclassa numeric vector
Species.Epulopiscium_unclassa numeric vector
Species.Erysipelatoclostridium_ramosuma numeric vector
Species.Erysipelatoclostridium_unclassa numeric vector
Species.Erysipelotrichaceae_ge_unclassa numeric vector
Species.Erysipelotrichaceae_UCG.003_unclassa numeric vector
Species.Erysipelotrichaceae_UCG.004_unclassa numeric vector
Species.Erysipelotrichaceae_unclassa numeric vector
Species.Eubacterium_callanderia numeric vector
Species.Eubacterium_desmolansa numeric vector
Species.Eubacterium_limosuma numeric vector
Species.Eubacterium_ramulusa numeric vector
Species.Eubacterium_rectalea numeric vector
Species.Eubacterium_ventriosuma numeric vector
Species.Ewingella_americanaa numeric vector
Species.Extibacter_murisa numeric vector
Species.Ezakiella_unclassa numeric vector
Species.Faecalibacterium_prausnitziia numeric vector
Species.Faecalibacterium_unclassa numeric vector
Species.Faecalibaculum_unclassa numeric vector
Species.Family_XIII_AD3011_group_unclassa numeric vector
Species.Family_XIII_ge_unclassa numeric vector
Species.Family_XIII_UCG.001_unclassa numeric vector
Species.Family_XIII_unclassa numeric vector
Species.Finegoldia_magnaa numeric vector
Species.Flavonifractor_plautiia numeric vector
Species.Frisingicoccus_caecimurisa numeric vector
Species.Fusicatenibacter_saccharivoransa numeric vector
Species.Fusicatenibacter_unclassa numeric vector
Species.Fusobacterium_canifelinuma numeric vector
Species.Fusobacterium_equinuma numeric vector
Species.Fusobacterium_mortiferuma numeric vector
Species.Fusobacterium_nucleatuma numeric vector
Species.Fusobacterium_periodonticuma numeric vector
Species.Fusobacterium_simiaea numeric vector
Species.Fusobacterium_variuma numeric vector
Species.Gabonia_massiliensisa numeric vector
Species.Gelria_unclassa numeric vector
Species.Gemella_haemolysansa numeric vector
Species.Gemmiger_formicilisa numeric vector
Species.Gordonibacter_pamelaeaea numeric vector
Species.Gordonibacter_urolithinfaciensa numeric vector
Species.Granulicatella_adiacensa numeric vector
Species.Haemophilus_parainfluenzaea numeric vector
Species.Haemophilus_pittmaniaea numeric vector
Species.Hafnia_alveia numeric vector
Species.Holdemania_filiformisa numeric vector
Species.Holdemania_massiliensisa numeric vector
Species.Howardella_ureilyticaa numeric vector
Species.Hungatella_effluviia numeric vector
Species.Hydrogenoanaerobacterium_unclassa numeric vector
Species.Ihubacter_massiliensisa numeric vector
Species.Intestinibacter_bartlettiia numeric vector
Species.Intestinimonas_butyriciproducensa numeric vector
Species.Intestinimonas_unclassa numeric vector
Species.Jonquetella_anthropia numeric vector
Species.Lachnoanaerobaculum_oralea numeric vector
Species.Lachnoclostridium_10_unclassa numeric vector
Species.Lachnoclostridium_unclassa numeric vector
Species.Lachnospira_pectinoschizaa numeric vector
Species.Lachnospira_unclassa numeric vector
Species.Lachnospiraceae_FCS020_group_unclassa numeric vector
Species.Lachnospiraceae_ge_unclassa numeric vector
Species.Lachnospiraceae_ND3007_group_unclassa numeric vector
Species.Lachnospiraceae_NK4A136_group_unclassa numeric vector
Species.Lachnospiraceae_NK4B4_group_unclassa numeric vector
Species.Lachnospiraceae_UCG.001_unclassa numeric vector
Species.Lachnospiraceae_UCG.003_unclassa numeric vector
Species.Lachnospiraceae_UCG.004_unclassa numeric vector
Species.Lachnospiraceae_UCG.008_unclassa numeric vector
Species.Lachnospiraceae_UCG.010_unclassa numeric vector
Species.Lachnospiraceae_unclassa numeric vector
Species.Lachnospiraceae_XPB1014_group_unclassa numeric vector
Species.Lactobacillus_amylovorusa numeric vector
Species.Lactobacillus_apisa numeric vector
Species.Lactobacillus_caseia numeric vector
Species.Lactobacillus_delbrueckiia numeric vector
Species.Lactobacillus_fermentuma numeric vector
Species.Lactobacillus_gasseria numeric vector
Species.Lactobacillus_inersa numeric vector
Species.Lactobacillus_mucosaea numeric vector
Species.Lactobacillus_murinusa numeric vector
Species.Lactobacillus_pentosusa numeric vector
Species.Lactobacillus_pontisa numeric vector
Species.Lactobacillus_reuteria numeric vector
Species.Lactobacillus_rhamnosusa numeric vector
Species.Lactobacillus_rogosaea numeric vector
Species.Lactobacillus_sakeia numeric vector
Species.Lactobacillus_salivariusa numeric vector
Species.Lactobacillus_sanfranciscensisa numeric vector
Species.Lactococcus_lactisa numeric vector
Species.Lactococcus_pisciuma numeric vector
Species.Lactonifactor_longoviformisa numeric vector
Species.Lactonifactor_unclassa numeric vector
Species.Lentimonas_unclassa numeric vector
Species.Leptotrichia_trevisaniia numeric vector
Species.Leptotrichia_unclassa numeric vector
Species.Leuconostoc_geliduma numeric vector
Species.Leuconostoc_lactisa numeric vector
Species.Levyella_massiliensisa numeric vector
Species.Longibaculum_murisa numeric vector
Species.Longicatena_caecimurisa numeric vector
Species.Macellibacteroides_fermentansa numeric vector
Species.Marvinbryantia_unclassa numeric vector
Species.Massiliomicrobiota_timonensisa numeric vector
Species.Megamonas_rupellensisa numeric vector
Species.Megasphaera_massiliensisa numeric vector
Species.Megasphaera_micronuciformisa numeric vector
Species.Megasphaera_unclassa numeric vector
Species.Mitochondria_ge_unclassa numeric vector
Species.Mogibacterium_pumiluma numeric vector
Species.Mogibacterium_timiduma numeric vector
Species.Mogibacterium_unclassa numeric vector
Species.Mollicutes_RF9_ge_unclassa numeric vector
Species.Morganella_morganiia numeric vector
Species.Moryella_unclassa numeric vector
Species.Muricomes_intestinia numeric vector
Species.NB1.n_ge_unclassa numeric vector
Species.Negativicoccus_massiliensisa numeric vector
Species.Neglecta_timonensisa numeric vector
Species.Neisseria_cinereaa numeric vector
Species.Neisseria_mucosaa numeric vector
Species.Odoribacter_laneusa numeric vector
Species.Odoribacter_splanchnicusa numeric vector
Species.Olsenella_scatoligenesa numeric vector
Species.Olsenella_ulia numeric vector
Species.Olsenella_unclassa numeric vector
Species.Oribacterium_asaccharolyticuma numeric vector
Species.Oscillibacter_ruminantiuma numeric vector
Species.Oscillibacter_unclassa numeric vector
Species.Oscillospira_unclassa numeric vector
Species.Parabacteroides_distasonisa numeric vector
Species.Parabacteroides_faecisa numeric vector
Species.Parabacteroides_goldsteiniia numeric vector
Species.Parabacteroides_gordoniia numeric vector
Species.Parabacteroides_johnsoniia numeric vector
Species.Parabacteroides_merdaea numeric vector
Species.Parabacteroides_unclassa numeric vector
Species.Paraprevotella_claraa numeric vector
Species.Parascardovia_denticolensa numeric vector
Species.Parasutterella_excrementihominisa numeric vector
Species.Parvimonas_micraa numeric vector
Species.Pediococcus_acidilacticia numeric vector
Species.Peptoclostridium_difficilea numeric vector
Species.Peptococcaceae_unclassa numeric vector
Species.Peptococcus_nigera numeric vector
Species.Peptococcus_unclassa numeric vector
Species.Peptoniphilus_coxiia numeric vector
Species.Peptoniphilus_hareia numeric vector
Species.Peptoniphilus_lacrimalisa numeric vector
Species.Peptostreptococcus_anaerobiusa numeric vector
Species.Peptostreptococcus_russelliia numeric vector
Species.Peptostreptococcus_stomatisa numeric vector
Species.Phascolarctobacterium_faeciuma numeric vector
Species.Phascolarctobacterium_succinatutensa numeric vector
Species.Phascolarctobacterium_unclassa numeric vector
Species.Phocea_massiliensisa numeric vector
Species.Porphyromonadaceae_unclassa numeric vector
Species.Porphyromonas_asaccharolyticaa numeric vector
Species.Porphyromonas_bennonisa numeric vector
Species.Porphyromonas_catoniaea numeric vector
Species.Porphyromonas_someraea numeric vector
Species.Porphyromonas_uenonisa numeric vector
Species.Prevotella_7_unclassa numeric vector
Species.Prevotella_9_unclassa numeric vector
Species.Prevotella_biviaa numeric vector
Species.Prevotella_buccaea numeric vector
Species.Prevotella_buccalisa numeric vector
Species.Prevotella_copria numeric vector
Species.Prevotella_corporisa numeric vector
Species.Prevotella_denticolaa numeric vector
Species.Prevotella_disiensa numeric vector
Species.Prevotella_fuscaa numeric vector
Species.Prevotella_histicolaa numeric vector
Species.Prevotella_melaninogenicaa numeric vector
Species.Prevotella_multisaccharivoraxa numeric vector
Species.Prevotella_nanceiensisa numeric vector
Species.Prevotella_orisa numeric vector
Species.Prevotella_salivaea numeric vector
Species.Prevotella_stercoreaa numeric vector
Species.Prevotella_timonensisa numeric vector
Species.Prevotellaceae_NK3B31_group_unclassa numeric vector
Species.Prevotellaceae_UCG.001_unclassa numeric vector
Species.Prevotellaceae_unclassa numeric vector
Species.Prevotellamassilia_timonensisa numeric vector
Species.Proteus_hauseria numeric vector
Species.Providencia_alcalifaciensa numeric vector
Species.Pseudobutyrivibrio_unclassa numeric vector
Species.Pseudoflavonifractor_capillosusa numeric vector
Species.Pseudomonas_aeruginosaa numeric vector
Species.Pseudomonas_fluorescensa numeric vector
Species.Pseudoramibacter_alactolyticusa numeric vector
Species.Pyramidobacter_piscolensa numeric vector
Species.Raoultella_ornithinolyticaa numeric vector
Species.Raoultibacter_massiliensisa numeric vector
Species.Rhodospirillaceae_unclassa numeric vector
Species.Rikenella_unclassa numeric vector
Species.Rikenellaceae_RC9_gut_group_unclassa numeric vector
Species.Robinsoniella_peoriensisa numeric vector
Species.Romboutsia_ilealisa numeric vector
Species.Roseburia_faecisa numeric vector
Species.Roseburia_hominisa numeric vector
Species.Roseburia_intestinalisa numeric vector
Species.Roseburia_inulinivoransa numeric vector
Species.Roseburia_unclassa numeric vector
Species.Rothia_dentocariosaa numeric vector
Species.Rothia_mucilaginosaa numeric vector
Species.Ruminiclostridium_1_unclassa numeric vector
Species.Ruminiclostridium_5_unclassa numeric vector
Species.Ruminiclostridium_6_unclassa numeric vector
Species.Ruminiclostridium_9_unclassa numeric vector
Species.Ruminiclostridium_unclassa numeric vector
Species.Ruminococcaceae_ge_unclassa numeric vector
Species.Ruminococcaceae_NK4A214_group_unclassa numeric vector
Species.Ruminococcaceae_UCG.002_unclassa numeric vector
Species.Ruminococcaceae_UCG.003_unclassa numeric vector
Species.Ruminococcaceae_UCG.004_unclassa numeric vector
Species.Ruminococcaceae_UCG.005_unclassa numeric vector
Species.Ruminococcaceae_UCG.008_unclassa numeric vector
Species.Ruminococcaceae_UCG.009_unclassa numeric vector
Species.Ruminococcaceae_UCG.010_unclassa numeric vector
Species.Ruminococcaceae_UCG.011_unclassa numeric vector
Species.Ruminococcaceae_UCG.013_unclassa numeric vector
Species.Ruminococcaceae_UCG.014_unclassa numeric vector
Species.Ruminococcaceae_unclassa numeric vector
Species.Ruminococcaceae_V9D2013_group_unclassa numeric vector
Species.Ruminococcus_1_unclassa numeric vector
Species.Ruminococcus_2_unclassa numeric vector
Species.Ruminococcus_callidusa numeric vector
Species.Ruminococcus_faecisa numeric vector
Species.Ruminococcus_lactarisa numeric vector
Species.Sarcina_ventriculia numeric vector
Species.Scardovia_wiggsiaea numeric vector
Species.Selenomonas_infelixa numeric vector
Species.Sellimonas_unclassa numeric vector
Species.Senegalimassilia_anaerobiaa numeric vector
Species.Senegalimassilia_unclassa numeric vector
Species.Shigella_flexneria numeric vector
Species.Shuttleworthia_satellesa numeric vector
Species.Shuttleworthia_unclassa numeric vector
Species.Slackia_exiguaa numeric vector
Species.Slackia_isoflavoniconvertensa numeric vector
Species.Slackia_piriformisa numeric vector
Species.Solobacterium_mooreia numeric vector
Species.Sphingomonas_yabuuchiaea numeric vector
Species.Staphylococcus_aureusa numeric vector
Species.Stomatobaculum_longuma numeric vector
Species.Streptococcus_agalactiaea numeric vector
Species.Streptococcus_alactolyticusa numeric vector
Species.Streptococcus_anginosusa numeric vector
Species.Streptococcus_dentirousettia numeric vector
Species.Streptococcus_dentisania numeric vector
Species.Streptococcus_intermediusa numeric vector
Species.Streptococcus_lutetiensisa numeric vector
Species.Streptococcus_mutansa numeric vector
Species.Streptococcus_oralisa numeric vector
Species.Streptococcus_parasanguinisa numeric vector
Species.Streptococcus_sanguinisa numeric vector
Species.Streptococcus_thermophilusa numeric vector
Species.Subdoligranulum_unclassa numeric vector
Species.Subdoligranulum_variabilea numeric vector
Species.Succiniclasticum_unclassa numeric vector
Species.Sutterella_stercoricanisa numeric vector
Species.Sutterella_unclassa numeric vector
Species.Sutterella_wadsworthensisa numeric vector
Species.Synergistes_unclassa numeric vector
Species.Syntrophococcus_sucromutansa numeric vector
Species.Terrisporobacter_mayombeia numeric vector
Species.Turicibacter_sanguinisa numeric vector
Species.Turicimonas_murisa numeric vector
Species.Tyzzerella_3_unclassa numeric vector
Species.Tyzzerella_nexilisa numeric vector
Species.Tyzzerella_unclassa numeric vector
Species.uncultured_ge_unclassa numeric vector
Species.vadinBE97_ge_unclassa numeric vector
Species.Varibaculum_cambriensea numeric vector
Species.Veillonella_atypicaa numeric vector
Species.Veillonella_dispara numeric vector
Species.Veillonella_parvulaa numeric vector
Species.Veillonella_rattia numeric vector
Species.Veillonella_unclassa numeric vector
Species.Veillonellaceae_unclassa numeric vector
Species.Victivallis_unclassa numeric vector
Species.Weissella_confusaa numeric vector
Examples
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