adjp_wysd: Westfall Young Step Down Function

In MDRCNY/PUMP: Power Under Multiplicity Project

Westfall Young Step Down Function

Description

This adjustment function utilizes the comp_rawp_ss helper function to compare each row of the matrix sample p-values under alternative hypothesis to all the rows in the matrix of the p-values under the complete null.

Usage

adjp_wysd(
  rawp.mat,
  B,
  Sigma,
  t.df,
  two.tailed,
  cl = NULL,
  verbose = TRUE,
  updateProgress = NULL
)

Arguments

rawp.mat	a matrix of raw p-values under H1. dimension: nrow = tnum, ncol = M
B	numer of WY permutations
Sigma	correlation matrix of null p-values
t.df	degrees of freedom of null p-values
two.tailed	one or two-tailed test
cl	cluster object for parallel computing
verbose	whether to print out messaging
updateProgress	function to update progress bar (only used for PUMP shiny app)

Value

a matrix of adjusted p-values

MDRCNY/PUMP documentation built on Feb. 26, 2025, 11:22 a.m.