plot_testcount: Plot average daily number of test

In MESuRS-Lab/mwss: Stochastic simulations of infectious disease spread in healthcare systems structured as a networked metapopulation

Plot average daily number of test

Description

plot_testcount returns an plot representing the average daily number of test performed over the simulations at different scales and for different populations. The daily number of test is represented by a barplot up to 30 time steps, then they are represented by dots and lines.

Usage

plot_testcount(trajmwss, scale = 0, pop = NULL, iter = FALSE, ward = FALSE, daysint = 1)

Arguments

trajmwss	List of data.table. Epidemiological trajectories simulated by the function mwss::multisim
scale	Integer. Indicated the scale for statistics: 0/ whole facility, 1/ wards.
pop	String. Define a subpopulation for statistics ("P": Test performed on patients, "H": Test performed on professionals ; default is FALSE: considering all tests).
iter	Integer. Define a specific simulation. Default is FALSE, providing average values over all simulations.
ward	String. Define a specific ward. Default is FALSE, considering all wards. At the facility scale '0' no ward can be specified.
daysint	Integer. Indicated time step use to calculate average daily number of test (default is 1 day).

Value

Test count plot

MESuRS-Lab/mwss documentation built on Sept. 12, 2023, 12:08 a.m.